GitHub - ifanirene/topic-analysis-k60: summary of topic annotation for perturb-seq data

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summary of topic annotation for perturb-seq data

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
analysis_results		analysis_results
.gitignore		.gitignore
analyze_artery_genes.py		analyze_artery_genes.py
analyze_celltypes.py		analyze_celltypes.py
analyze_knockdown_impact.py		analyze_knockdown_impact.py
analyze_perturbation_patterns.py		analyze_perturbation_patterns.py
analyze_topic_relationships.py		analyze_topic_relationships.py
create_integrated_topic_pages.py		create_integrated_topic_pages.py
create_string_network.py		create_string_network.py
create_summary_page.py		create_summary_page.py
create_topic1_viz.py		create_topic1_viz.py
generate_gene_volcano_plots.py		generate_gene_volcano_plots.py
generate_pathway_analysis.py		generate_pathway_analysis.py
generate_topic_pages.py		generate_topic_pages.py
generate_volcano_plots.py		generate_volcano_plots.py
index.html		index.html
start_server.py		start_server.py
string_network.js		string_network.js
topic10_analysis.md		topic10_analysis.md
topic10_genes.txt		topic10_genes.txt
topic10_integrated.html		topic10_integrated.html
topic10_kegg.png		topic10_kegg.png
topic10_network.png		topic10_network.png
topic10_process.png		topic10_process.png
topic11_analysis.md		topic11_analysis.md
topic11_genes.txt		topic11_genes.txt
topic11_integrated.html		topic11_integrated.html
topic11_kegg.png		topic11_kegg.png
topic11_network.png		topic11_network.png
topic11_process.png		topic11_process.png
topic12_analysis.md		topic12_analysis.md
topic12_genes.txt		topic12_genes.txt
topic12_integrated.html		topic12_integrated.html
topic12_kegg.png		topic12_kegg.png
topic12_network.png		topic12_network.png
topic12_process.png		topic12_process.png
topic13_analysis.md		topic13_analysis.md
topic13_genes.txt		topic13_genes.txt
topic13_integrated.html		topic13_integrated.html
topic13_kegg.png		topic13_kegg.png
topic13_network.png		topic13_network.png
topic13_process.png		topic13_process.png
topic14_analysis.md		topic14_analysis.md
topic14_genes.txt		topic14_genes.txt
topic14_integrated.html		topic14_integrated.html
topic14_kegg.png		topic14_kegg.png
topic14_network.png		topic14_network.png
topic14_process.png		topic14_process.png
topic15_analysis.md		topic15_analysis.md
topic15_genes.txt		topic15_genes.txt
topic15_integrated.html		topic15_integrated.html
topic15_kegg.png		topic15_kegg.png
topic15_network.png		topic15_network.png
topic15_process.png		topic15_process.png
topic16_analysis.md		topic16_analysis.md
topic16_genes.txt		topic16_genes.txt
topic16_integrated.html		topic16_integrated.html
topic16_kegg.png		topic16_kegg.png
topic16_network.png		topic16_network.png
topic16_process.png		topic16_process.png
topic17_analysis.md		topic17_analysis.md
topic17_genes.txt		topic17_genes.txt
topic17_integrated.html		topic17_integrated.html
topic17_kegg.png		topic17_kegg.png
topic17_network.png		topic17_network.png
topic17_process.png		topic17_process.png
topic18_analysis.md		topic18_analysis.md
topic18_genes.txt		topic18_genes.txt
topic18_integrated.html		topic18_integrated.html
topic18_kegg.png		topic18_kegg.png
topic18_network.png		topic18_network.png
topic18_process.png		topic18_process.png
topic19_analysis.md		topic19_analysis.md
topic19_genes.txt		topic19_genes.txt
topic19_integrated.html		topic19_integrated.html
topic19_kegg.png		topic19_kegg.png
topic19_network.png		topic19_network.png
topic19_process.png		topic19_process.png
topic1_analysis.html		topic1_analysis.html
topic1_analysis.md		topic1_analysis.md
topic1_genes.txt		topic1_genes.txt
topic1_integrated.html		topic1_integrated.html
topic1_kegg.png		topic1_kegg.png
topic1_network.png		topic1_network.png
topic1_process.png		topic1_process.png
topic1_string_network.json		topic1_string_network.json
topic20_analysis.md		topic20_analysis.md
topic20_genes.txt		topic20_genes.txt
topic20_integrated.html		topic20_integrated.html
topic20_kegg.png		topic20_kegg.png
topic20_network.png		topic20_network.png
topic20_process.png		topic20_process.png
topic21_analysis.md		topic21_analysis.md
topic21_genes.txt		topic21_genes.txt
topic21_integrated.html		topic21_integrated.html
topic21_kegg.png		topic21_kegg.png
topic21_network.png		topic21_network.png
topic21_process.png		topic21_process.png
topic22_analysis.md		topic22_analysis.md
topic22_genes.txt		topic22_genes.txt