prep-sanger-qc.0.1.3.0

• Update Sanger bas_stats.pl script to Sanger bam_stats tool in description (#33)

variant-filter.v0.1.0

• Release variant-filter.v0.1.0 (32f0aa2)
• Package variant-filter.v0.1.0.tar.gz (sha256: ce816b95eeaca725d7896197baab1fe8c2034285d3a10121cf03a0f31e354cec)

sanger-wgs-variant-caller.2.1.0-9

set pu and pi as optional parameters
use better default values

prep-sanger-supplement.0.1.2.0

• fixed a bug for removing unwanted files when it's not timing supplement
• changed files to files_in_tgz
• added a new test to cover supplements from BRASS and ASCAT

prep-sanger-qc.0.1.2.0

add description, metrics and files_in_tgz field into extra_info
disable aggregated bas_stats extraction

generate-bas.0.2.1.0

• added tumour_normal params to be explicit, which helps later steps in generation correct SONG payload

prep-sanger-supplement.0.1.1.0

• excluded BRASS *.brm.bam files from supplement

sanger-wgs-variant-caller.2.1.0-6

• add nf version of sanger-variant-caller
• add option to disable step of pindel and caveman annotation
• fix a potential error in analysisWGS, should build the cache before the real parallel blocks starting
• add -r to ln when create symbolic links
• set HOME to be PWD in perl script

sanger-wxs-variant-caller.3.1.6-3

• add nf version of sanger-variant-caller
• add option to disable step of pindel and caveman annotation
• fix a potential error in analysisWGS, should build the cache before the real parallel blocks starting
• add -r to ln when create symbolic links

repack-sanger-results.0.2.0.0

Repack sanger results to different tgz files.