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env2.yml
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env2.yml
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name: base
channels:
- mvdbeek
- defaults
- bioconda
- conda-forge
- https://mirrors.ustc.edu.cn/anaconda/pkgs/main/
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- asciitree=0.3.3
- bedtools=2.30.0
- biopython=1.79
- blas=1.0
- blosc=1.21.0
- brotlipy=0.7.0
- bzip2=1.0.8
- c-ares=1.18.1
- ca-certificates=2023.12.12
- cached-property=1.5.2
- cached_property=1.5.2
- certifi=2023.11.17
- cffi=1.15.0
- charset-normalizer=2.0.4
- click=8.1.3
- cloudpickle=2.2.0
- colorama=0.4.4
- coloredlogs=15.0.1
- colormath=3.0.0
- commonmark=0.9.1
- conda=22.9.0
- conda-content-trust=0.1.1
- conda-package-handling=1.8.1
- cooler=0.8.11
- cryptography=36.0.0
- curl=7.86.0
- cycler=0.11.0
- dask=2022.2.1
- dask-core=2022.2.1
- dataclasses=0.8
- deeptools=3.5.1
- deeptoolsintervals=0.1.9
- dill=0.3.6
- distributed=2022.2.1
- expat=2.5.0
- fastqc=0.11.9
- font-ttf-dejavu-sans-mono=2.37
- fontconfig=2.14.1
- freetype=2.12.1
- fsspec=2022.10.0
- future=0.18.2
- heapdict=1.0.1
- hisat2=2.2.1
- htslib=1.15.1
- humanfriendly=10.0
- icu=70.1
- idna=3.3
- importlib-metadata=5.0.0
- jinja2=3.1.2
- jpeg=9e
- keyutils=1.6.1
- kiwisolver=1.4.4
- krb5=1.19.3
- lcms2=2.12
- ld_impl_linux-64=2.35.1
- lerc=3.0
- libblas=3.9.0
- libcblas=3.9.0
- libcurl=7.86.0
- libdeflate=1.10
- libedit=3.1.20191231
- libev=4.33
- libffi=3.3
- libgcc=7.2.0
- libgcc-ng=12.2.0
- libgfortran-ng=12.2.0
- libgfortran5=12.2.0
- libiconv=1.16
- liblapack=3.9.0
- libnghttp2=1.47.0
- libnsl=2.0.0
- libopenblas=0.3.21
- libpng=1.6.38
- libssh2=1.10.0
- libstdcxx-ng=12.2.0
- libtiff=4.3.0
- libuuid=2.32.1
- libwebp-base=1.2.4
- libxml2=2.9.14
- libzlib=1.2.13
- llvm-openmp=14.0.4
- locket=1.0.0
- lz4-c=1.9.3
- lzo=2.10
- lzstring=1.0.4
- markdown=3.4.1
- markupsafe=2.1.1
- matplotlib-base=3.4.3
- mock=4.0.3
- msgpack-python=1.0.4
- multiprocess=0.70.14
- ncurses=6.3
- networkx=2.8.7
- numexpr=2.8.3
- numpy=1.23.4
- olefile=0.46
- openjdk=8.0.332
- openjpeg=2.5.0
- openssl=1.1.1w
- ossuuid=1.6.2
- packaging=21.3
- pairix=0.3.7
- pandas=1.5.1
- partd=1.3.0
- pillow=8.4.0
- pip=21.2.4
- plotly=5.11.0
- psutil=5.9.3
- py2bit=0.3.0
- pybigwig=0.3.18
- pycosat=0.6.3
- pycparser=2.21
- pyfaidx=0.7.1
- pygments=2.13.0
- pyopenssl=22.0.0
- pyparsing=3.0.9
- pysam=0.19.1
- pysocks=1.7.1
- pytables=3.7.0
- python=3.9.12
- python-dateutil=2.8.2
- python_abi=3.9
- pytz=2022.5
- pyvcf3=1.0.3
- pyyaml=6.0
- readline=8.1.2
- requests=2.27.1
- rich=12.6.0
- rich-click=1.5.2
- ruamel_yaml=0.15.100
- scipy=1.9.3
- setuptools=61.2.0
- simplejson=3.17.6
- six=1.16.0
- sortedcontainers=2.4.0
- spectra=0.0.11
- sqlite=3.38.2
- tblib=1.7.0
- tenacity=8.1.0
- tk=8.6.11
- toolz=0.12.0
- tornado=6.2
- tqdm=4.63.0
- typing_extensions=4.4.0
- tzdata=2022a
- urllib3=1.26.8
- wheel=0.37.1
- xz=5.2.5
- yaml=0.2.5
- zict=2.2.0
- zipp=3.10.0
- zlib=1.2.13
- zstd=1.5.2
- pip:
- bioframe==0.3.3
- coolpuppy==1.0.0
- cooltools==0.5.2
- cython==0.29.32
- cytoolz==0.10.1
- docutils==0.19
- h5sparse==0.1.0
- imageio==2.22.2
- joblib==1.2.0
- llvmlite==0.39.1
- m2r2==0.3.3
- mistune==0.8.4
- more-itertools==9.0.0
- multiprocessing-logging==0.3.3
- natsort==8.2.0
- numba==0.56.3
- pywavelets==1.4.1
- scikit-image==0.19.3
- scikit-learn==1.1.3
- seaborn==0.12.1
- threadpoolctl==3.1.0
- tifffile==2022.10.10
prefix: /opt/anaconda