env1.yml

name: env1
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - anyio=3.6.2
  - argon2-cffi=21.3.0
  - argon2-cffi-bindings=21.2.0
  - asttokens=2.1.0
  - attrs=22.1.0
  - babel=2.11.0
  - backcall=0.2.0
  - backports=1.0
  - backports.csv=1.0.7
  - backports.functools_lru_cache=1.6.4
  - beautifulsoup4=4.11.1
  - bedtools=2.30.0
  - bleach=5.0.1
  - brotlipy=0.7.0
  - bzip2=1.0.8
  - c-ares=1.18.1
  - ca-certificates=2023.7.22
  - cffi=1.15.1
  - colorama=0.4.6
  - cryptography=38.0.3
  - cython=0.29.32
  - dbus=1.13.6
  - debugpy=1.6.3
  - decorator=5.1.1
  - defusedxml=0.7.1
  - deprecated=1.2.13
  - entrypoints=0.4
  - executing=1.2.0
  - expat=2.5.0
  - flit-core=3.8.0
  - gettext=0.21.1
  - importlib-metadata=5.0.0
  - importlib_metadata=5.0.0
  - importlib_resources=5.10.0
  - ipykernel=6.17.0
  - ipython=8.6.0
  - ipython_genutils=0.2.0
  - jaraco.classes=3.2.3
  - jedi=0.18.1
  - jeepney=0.8.0
  - jinja2=3.1.2
  - json5=0.9.5
  - jsonschema=4.17.0
  - jupyter_client=7.4.4
  - jupyter_core=4.11.2
  - jupyter_server=1.23.0
  - jupyterlab=3.5.0
  - jupyterlab_pygments=0.2.2
  - jupyterlab_server=2.16.2
  - keyring=23.11.0
  - keyutils=1.6.1
  - krb5=1.19.3
  - ld_impl_linux-64=2.39
  - libblas=3.9.0
  - libcblas=3.9.0
  - libcurl=7.86.0
  - libdeflate=1.13
  - libedit=3.1.20191231
  - libev=4.33
  - libffi=3.4.2
  - libgcc-ng=12.2.0
  - libgfortran-ng=12.2.0
  - libgfortran5=12.2.0
  - libglib=2.74.1
  - libgomp=12.2.0
  - libiconv=1.17
  - liblapack=3.9.0
  - libnghttp2=1.47.0
  - libnsl=2.0.0
  - libopenblas=0.3.21
  - libsodium=1.0.18
  - libsqlite=3.39.4
  - libssh2=1.10.0
  - libstdcxx-ng=12.2.0
  - libuuid=2.32.1
  - libzlib=1.2.13
  - matplotlib-inline=0.1.6
  - more-itertools=9.0.0
  - nbclassic=0.4.8
  - nbclient=0.7.0
  - nbconvert=7.2.3
  - nbconvert-core=7.2.3
  - nbconvert-pandoc=7.2.3
  - nbformat=5.7.0
  - ncurses=6.3
  - nest-asyncio=1.5.6
  - notebook=6.5.2
  - notebook-shim=0.2.2
  - openssl=1.1.1w
  - pandoc=2.19.2
  - pandocfilters=1.5.0
  - parso=0.8.3
  - pcre2=10.40
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pip=22.3.1
  - pkgutil-resolve-name=1.3.10
  - prometheus_client=0.15.0
  - prompt-toolkit=3.0.32
  - psutil=5.9.4
  - ptyprocess=0.7.0
  - pure_eval=0.2.2
  - pybedtools=0.9.0
  - pycparser=2.21
  - pyopenssl=22.1.0
  - pyrsistent=0.19.2
  - pysam=0.19.1
  - pysocks=1.7.1
  - python=3.10.6
  - python-dateutil=2.8.2
  - python-fastjsonschema=2.16.2
  - python_abi=3.10
  - pytz=2022.6
  - pyzmq=24.0.1
  - readline=8.1.2
  - secretstorage=3.3.3
  - send2trash=1.8.0
  - setuptools=65.5.1
  - six=1.16.0
  - sniffio=1.3.0
  - soupsieve=2.3.2.post1
  - stack_data=0.6.0
  - synapseclient=2.7.0
  - terminado=0.17.0
  - tinycss2=1.2.1
  - tk=8.6.12
  - tomli=2.0.1
  - tornado=6.2
  - tqdm=4.66.1
  - traitlets=5.5.0
  - typing_extensions=4.4.0
  - tzdata=2022f
  - wcwidth=0.2.5
  - webencodings=0.5.1
  - websocket-client=1.4.2
  - wheel=0.38.3
  - wrapt=1.14.1
  - xz=5.2.6
  - zeromq=4.3.4
  - zipp=3.10.0
  - zlib=1.2.13
  - pip:
    - adjusttext==1.0.4
    - anndata==0.9.2
    - asciitree==0.3.3
    - bioframe==0.6.1
    - biopython==1.82
    - certifi==2023.11.17
    - charset-normalizer==3.3.2
    - click==8.1.7
    - coloredlogs==15.0.1
    - colormath==3.0.0
    - contourpy==1.2.0
    - cooler==0.9.3
    - coolpuppy==1.0.0
    - cooltools==0.6.1
    - cycler==0.12.1
    - cytoolz==0.10.1
    - dill==0.3.6
    - docutils==0.19
    - et-xmlfile==1.1.0
    - fonttools==4.46.0
    - future==0.18.3
    - gseapy==1.0.6
    - h5py==3.7.0
    - h5sparse==0.1.0
    - humanfriendly==10.0
    - humanize==4.9.0
    - idna==3.6
    - imageio==2.22.4
    - joblib==1.2.0
    - karyopype==0.1.6
    - kiwisolver==1.4.5
    - llvmlite==0.39.1
    - lzstring==1.0.4
    - m2r2==0.3.3
    - markdown==3.5.1
    - markdown-it-py==3.0.0
    - markupsafe==2.1.3
    - matplotlib==3.8.2
    - mdurl==0.1.2
    - mistune==0.8.4
    - multiprocess==0.70.14
    - multiprocessing-logging==0.3.3
    - multiqc==1.12.dev0
    - natsort==8.2.0
    - networkx==3.2.1
    - numba==0.56.4
    - numpy==1.23.5
    - openpyxl==3.1.2
    - packaging==23.2
    - pandas==1.5.1
    - patsy==0.5.3
    - pillow==10.1.0
    - plotly==5.17.0
    - pyaml-env==1.2.1
    - pybbi==0.3.5
    - pydeseq2==0.4.1
    - pyfaidx==0.7.1
    - pygments==2.17.2
    - pypairix==0.3.7
    - pyparsing==3.1.1
    - pypdf==3.17.4
    - python-circos==0.3.0
    - pywavelets==1.4.1
    - pyyaml==6.0.1
    - requests==2.31.0
    - rich==13.7.0
    - rich-click==1.7.1
    - scikit-image==0.19.3
    - scikit-learn==1.1.3
    - scipy==1.9.3
    - seaborn==0.13.0
    - simplejson==3.19.2
    - spectra==0.0.11
    - statannot==0.2.3
    - statsmodels==0.14.0
    - tenacity==8.2.3
    - threadpoolctl==3.1.0
    - tifffile==2022.10.10
    - toolz==0.12.0
    - upsetplot==0.8.0
    - urllib3==2.1.0