Skip to content

Releases: hms-dbmi/pic-sure

v2.20.0

18 Dec 18:03
c748ac2
Compare
Choose a tag to compare

What's Changed

Enhancements

Full Changelog: v2.19.1...v2.20.0

v2.19.1

21 Nov 16:15
2772073
Compare
Choose a tag to compare

What's Changed

Other Changes

Full Changelog: v2.19.0...v2.19.1

v2.19.0

21 Nov 14:14
fc1b10b
Compare
Choose a tag to compare

What's Changed

Enhancements

  • ALS-7712: ALlow PFB Export to 3rd party via signed URL by @ramari16 in #211

Full Changelog: v2.18.0...v2.19.0

v2.18.0

04 Nov 20:38
dab00d5
Compare
Choose a tag to compare

What's Changed

Enhancements

  • [ALS-7554] User should not be able to search without a valid token by @Gcolon021 in #208

Bug Fixes

Full Changelog: v2.17.0...v2.18.0

v2.17.0

03 Oct 14:35
5fec463
Compare
Choose a tag to compare

What's Changed

Enhancements

  • [ALS-6665] Add JWTResponseFilter to handle refreshed tokens by @Gcolon021 in #200
  • ALS-7014: Implement handling of signed URLs from HPDS by @ramari16 in #202
  • [ALS-6921] Implement Open Access in PSAMA by @Gcolon021 in #205
  • [ALS-7475] Add detailed logging for container path and query parameters by @Gcolon021 in #207

Bug Fixes

  • Visualization should not need tokens now in Open Access by @JamesPeck in #206

Other Changes

Full Changelog: v2.16.0...v2.17.0

v2.16.0

19 Aug 16:32
8d23ab9
Compare
Choose a tag to compare

What's Changed

Bug Fixes

  • ALS-6511: Set async query result to application/octet content type by @ramari16 in #201

Full Changelog: v2.14.0...v2.16.0

v2.15.0

22 Jul 15:49
b330f2a
Compare
Choose a tag to compare

What's Changed

Enhancements

  • ALS-6375: Suppress showing user 0 results in open-pic-sure by @ramari16 in #193

Full Changelog: v2.14.1...v2.15.0

v2.14.0

09 May 12:41
b330f2a
Compare
Choose a tag to compare
  • [ALS-5827] Enable search by CA id
  • If a uuid does not match a query, instead search for common area UUID
  • If we have a collision, I'm buying a lottery ticket
  • [ALS-5787] Open Access StatViz is not showing "Other" (#180)

  • Update key length handling in limitKeySize

The limitKeySize method in the VisualizationUtil class has been updated to ensure key uniqueness when keys exceed a certain length. A more robust method of shortening the keys has been implemented: if the key is longer than 45 characters, it is cut off and replaced with "..." and additional characters are appended to ensure uniqueness if needed. This helps limit key size while preserving uniqueness.

  • Add VisualizationUtilTests and refine key shortening logic

Added a new test class, VisualizationUtilTests to validate the functionality of the VisualizationUtil class. Adjusted the 'limitKeySize' method to ensure key uniqueness when keys are shortened to a maximum length of 45 characters. If shortened keys are not unique, additional trailing characters are included until uniqueness is achieved.

  • Add check on length before substring

  • Update pic-sure-util/src/main/java/edu/harvard/dbmi/avillach/util/VisualizationUtil.java

  • Update pic-sure-util/src/main/java/edu/harvard/dbmi/avillach/util/VisualizationUtil.java

  • Update pic-sure-util/src/main/java/edu/harvard/dbmi/avillach/util/VisualizationUtil.java

  • Update pic-sure-resources/pic-sure-visualization-resource/src/test/java/edu/harvard/hms/dbmi/avillach/resource/visualization/service/VisualizationUtilTests.java

Co-authored-by: Luke Sikina lucas.sikina@gmail.com

  • Fix import for modified unit test

  • Refactor and add test cases for key size limiting function

Refactors existing code by simplifying key size limiting logic in VisualizationUtil and added several new unit tests to ensure its correct behavior with different input scenarios including long keys, empty maps, null maps, and uniqueness near middle.

  • Update null handling in VisualizationUtil's limitKeySize

Changed the handling of null input in VisualizationUtil's limitKeySize from returning a new HashMap to throwing an IllegalArgumentException. Also, updated the corresponding test to check for this exception instead of comparing with an empty map.


Co-authored-by: Luke Sikina lucas.sikina@gmail.com

  • Refine the condition for empty return in DataProcessingService (#184)

Adjusted the condition under which an empty HashMap is returned in the DataProcessingService. Now, an empty HashMap will only be returned when both the maximum and minimum values in the data are 0, and the number of bins is also 0. This change takes into account situations where the data contains values but the min and max are both 0.

  • ALS-5387: Remove stack from resources table (#186)

  • [ALS-5422] Add persistence.xml to visualization resource (#161) (#162)
    The visualization resource is failing to start due to an error injecting persistence unit into CDI managed bean. It is unable to find a persistence unit named ''.

  • ALS-5387: Remove stack from resources table

  • ALS-5387: More robust implementation of feature


Co-authored-by: Gcolon021 34667267+Gcolon021@users.noreply.github.com
Co-authored-by: GeorgeC gcolon021@gmail.com

  • [ALS-6222] Status endpoints now filters resources (#189)

The database contains both open and auth hpds even if it wasn't deployed. This means we attempt to check for a resource that doesn't exist. This results in our service always showing degraded.


Co-authored-by: Luke Sikina lucas.skina@gmail.com
Co-authored-by: Gcolon021 34667267+Gcolon021@users.noreply.github.com
Co-authored-by: Luke Sikina lucas.sikina@gmail.com
Co-authored-by: ramari16 ramari16@gmail.com
Co-authored-by: GeorgeC gcolon021@gmail.com
Full Changelog: v2.13.1...v2.14.0

v2.14.1

28 May 20:36
e937190
Compare
Choose a tag to compare

What's Changed

Enhancements

  • [ALS-5787] Open Access StatViz is not showing "Other" by @Gcolon021 in #180
  • ALS-5387: Remove stack from resources table by @ramari16 in #186

Bug Fixes

v2.13.1

03 May 15:08
c9e01db
Compare
Choose a tag to compare

What's Changed

Enhancements

  • ALS-6375: Suppress showing user 0 results in open-pic-sure by @ramari16 in #193

Full Changelog: v2.12.0...v2.13.1