From 724764e9dcb0dac7797ff65e96104113a7f79610 Mon Sep 17 00:00:00 2001
From: Ryan Amari <ramari16@gmail.com>
Date: Tue, 8 Oct 2024 09:53:08 -0400
Subject: [PATCH] Logging to fix tests

---
 .github/workflows/github-actions-test.yml                       | 2 +-
 .../hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java   | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/github-actions-test.yml b/.github/workflows/github-actions-test.yml
index 603b2673..474287ed 100644
--- a/.github/workflows/github-actions-test.yml
+++ b/.github/workflows/github-actions-test.yml
@@ -16,4 +16,4 @@ jobs:
       - name: Test with Maven
         run: mvn clean test
         env:
-          GITHUB_TOKEN: ${{ github.token }}
\ No newline at end of file
+          GITHUB_TOKEN: ${{ github.token }}
diff --git a/processing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java b/processing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java
index 92f77b92..e823a69e 100644
--- a/processing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java
+++ b/processing/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PhenotypeMetaStore.java
@@ -45,12 +45,14 @@ public PhenotypeMetaStore(@Value("${HPDS_DATA_DIRECTORY:/opt/local/hpds/}") Stri
         columnMetaFile = hpdsDataDirectory + "columnMeta.javabin";
         try (ObjectInputStream objectInputStream = new ObjectInputStream(new GZIPInputStream(new FileInputStream(columnMetaFile)));){
             TreeMap<String, ColumnMeta> _metastore = (TreeMap<String, ColumnMeta>) objectInputStream.readObject();
+            log.info("_metastore.size() = " + _metastore.size());
             TreeMap<String, ColumnMeta> metastoreScrubbed = new TreeMap<String, ColumnMeta>();
             for(Map.Entry<String,ColumnMeta> entry : _metastore.entrySet()) {
                 metastoreScrubbed.put(entry.getKey().replaceAll("\\ufffd",""), entry.getValue());
             }
             metaStore = metastoreScrubbed;
             patientIds = (TreeSet<Integer>) objectInputStream.readObject();
+            log.info("patientIds.size() = " + patientIds.size());
             objectInputStream.close();
         } catch (IOException | ClassNotFoundException e) {
             log.warn("************************************************");