_pkgdown.yml

url: https://henningte.github.io/ir/
template:
  bootstrap: 5

navbar:
  structure:
    right: github
  components:
    github:
      icon: fab fa-github fa-lg
      href: https://github.com/henningte/ir/
    articles:
      text: Articles
      menu:
      - text: Introduction to the 'ir' package
        href: articles/ir-introduction.html
      - text: Introduction to the `ir`class
        href: articles/ir-class.html
    news:
      text: News
      menu:
      - text: News
        href: news/index.html

reference:
  - title: "Overview"
    desc: >
      Pacakge overview
    contents:
      - ir-package
  - title: "ir-class"
    desc: >
      Create `ir`-objects, subset `ir` objects
    contents:
      - ir_new_ir
      - ir_as_ir
      - ir_as_ir.data.frame
      - ir_drop_spectra
      - ir_get_intensity
      - ir_get_wavenumberindex
      - ir_get_spectrum
      - ir_remove_missing
      - ir_flatten
      - rep.ir
      - bind
      - '[.ir'
      - '$.ir'
      - '[[.ir'
      - '$<-.ir'
      - '[<-.ir'
      - '[[<-.ir'
  - title: "Plotting spectra"
    desc: >
      Plotting spectra
    contents:
      - plot.ir
  - title: "Import"
    desc: >
      Import of spectra
    contents:
      - starts_with("ir_import")
  - title: "Export"
    desc: >
      Export of spectra
    contents:
      - ir_export_prepare
  - title: "Spectral processing"
    desc: >
      Spectral preprocessing
    contents:
      - ir_average
      - ir_bc
      - ir_bin
      - ir_clip
      - ir_interpolate
      - ir_interpolate_region
      - ir_normalize
      - ir_smooth
      - ir_correct_atmosphere
      - starts_with("ir_to_")
  - title: "Spectral analysis"
    desc: >
      Spectral analysis
    contents:
      - Ops.ir
      - ir_add
      - ir_subtract
      - ir_multiply
      - ir_divide
      - ir_variance_region
      - range
  - title: "tidyverse methods"
    desc: >
      tidyverse methods for `ir` objects
    contents:
      - arrange.ir
      - distinct.ir
      - extract.ir
      - filter-joins
      - filter.ir
      - group_by
      - mutate-joins
      - mutate
      - nest
      - pivot_longer.ir
      - pivot_wider.ir
      - rename
      - rowwise.ir
      - select.ir
      - separate.ir
      - separate_rows.ir
      - slice
      - summarize
      - unite.ir
      # - has_concept("tidyverse") # ---todo: use this again when https://github.com/r-lib/pkgdown/issues/2126 is fixed.
  - title: "Sample data"
    desc: >
      Sample dataset
    contents:
      - ir_sample_data
  - title: internal
    contents:
      - ir_bc_polynomial
      - ir_bc_rubberband
      - ir_bc_sg
      - ir_flat_clean
      - ir_new_ir_flat
      - ir_stack