MKDocs fixes (#169)

* Update logging

* Mkdocs fixes (#168)

* Update version in pyproject.toml

---------

Co-authored-by: bputzeys <benoit@helical-ai.com>
Co-authored-by: Benoit Putzeys <157973952+bputzeys@users.noreply.github.com>

docs/index.md

@@ -91,13 +91,13 @@ Within the `example/notebooks` folder, open the notebook of your choice. We reco
 
 | Example | Description | Colab |
 | ----------- | ----------- |----------- |                                                        
-|[Quick-Start-Tutorial.ipynb](https://github.com/helicalAI/helical/blob/main/examples/notebooks/Quick-Start-Tutorial.ipynb)| A tutorial to quickly get used to the helical package and environment. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Quick-Start-Tutorial.ipynb)|
-|[Helix-mRNA.ipynb](./examples/notebooks/Helix-mRNA.ipynb)|An example of how to use the Helix-mRNA model.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Helix-mRNA.ipynb) |
-|[Geneformer-vs-UCE.ipynb](https://github.com/helicalAI/helical/blob/main/examples/notebooks/Geneformer-vs-UCE.ipynb) | Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Geneformer-vs-UCE.ipynb) |
-|[Hyena-DNA-Inference.ipynb](https://github.com/helicalAI/helical/blob/main/examples/notebooks/Hyena-DNA-Inference.ipynb)|An example how to do probing with HyenaDNA by training a neural network on 18 downstream classification tasks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Hyena-DNA-Inference.ipynb)|
-|[Cell-Type-Annotation.ipynb](https://github.com/helicalAI/helical/blob/main/examples/notebooks/Cell-Type-Annotation.ipynb)|An example how to do probing with scGPT by training a neural network to predict cell type annotations.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Cell-Type-Annotation.ipynb) |
-|[Cell-Type-Classification-Fine-Tuning.ipynb](./examples/notebooks/Cell-Type-Classification-Fine-Tuning.ipynb)|An example how to fine-tune different models on classification tasks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Cell-Type-Classification-Fine-Tuning.ipynb) |
-|[HyenaDNA-Fine-Tuning.ipynb](./examples/notebooks/HyenaDNA-Fine-Tuning.ipynb)|An example of how to fine-tune the HyenaDNA model on downstream benchmarks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/HyenaDNA-Fine-Tuning.ipynb) |
+|[Quick-Start-Tutorial.ipynb](./notebooks/Quick-Start-Tutorial.ipynb)| A tutorial to quickly get used to the helical package and environment. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Quick-Start-Tutorial.ipynb)|
+|[Helix-mRNA.ipynb](./notebooks/Helix-mRNA.ipynb)|An example of how to use the Helix-mRNA model.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Helix-mRNA.ipynb) |
+|[Geneformer-vs-UCE.ipynb](./notebooks/Geneformer-vs-UCE.ipynb) | Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Geneformer-vs-UCE.ipynb) |
+|[Hyena-DNA-Inference.ipynb](./notebooks/Hyena-DNA-Inference.ipynb)|An example how to do probing with HyenaDNA by training a neural network on 18 downstream classification tasks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Hyena-DNA-Inference.ipynb)|
+|[Cell-Type-Annotation.ipynb](./notebooks/Cell-Type-Annotation.ipynb)|An example how to do probing with scGPT by training a neural network to predict cell type annotations.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Cell-Type-Annotation.ipynb) |
+|[Cell-Type-Classification-Fine-Tuning.ipynb](./notebooks/Cell-Type-Classification-Fine-Tuning.ipynb)|An example how to fine-tune different models on classification tasks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/Cell-Type-Classification-Fine-Tuning.ipynb) |
+|[HyenaDNA-Fine-Tuning.ipynb](./notebooks/HyenaDNA-Fine-Tuning.ipynb)|An example of how to fine-tune the HyenaDNA model on downstream benchmarks.|[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/notebooks/HyenaDNA-Fine-Tuning.ipynb) |
 | Coming Soon | New models such as SCimilarity, scVI; benchmarking scripts; new use cases; others |
 
 ## Stuck somewhere ? Other ideas ?