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index 4ce320c..9173978 100644
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     <div class="quarto-title-meta-contents">
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diff --git a/datasets/synthdata.html b/datasets/synthdata.html
index 8c4975e..3cc3742 100644
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     <div class="quarto-title-meta-contents">
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diff --git a/listings.json b/listings.json
index e5de45d..386d43b 100644
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+      "/news/past/2024-09-10-scverse2024.html",
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diff --git a/news.html b/news.html
index 2f50b89..f26b176 100644
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 <td>
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 <td>
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 <td>
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 </td>
@@ -589,7 +576,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jose AR Herrera</span>
 </td>
 </tr>
-<tr data-index="10" data-categories="conference,data-management,talk" data-listing-date-sort="1699315200000" data-listing-file-modified-sort="1725275391092" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="40" data-listing-title-sort="From Data Chaos to Data Harmony" data-listing-filename-sort="2023-11-07-RDMtalk.qmd">
+<tr data-index="11" data-categories="conference,data-management,talk" data-listing-date-sort="1699315200000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="40" data-listing-title-sort="From Data Chaos to Data Harmony" data-listing-filename-sort="2023-11-07-RDMtalk.qmd">
 <td>
 <a href="./news/past/2023-11-07-RDMtalk.html" class="title listing-title">From Data Chaos to Data Harmony</a>
 </td>
@@ -603,7 +590,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="11" data-categories="workshop,conference,AU" data-listing-date-sort="1694044800000" data-listing-file-modified-sort="1725275391092" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="56" data-listing-title-sort="'Digging into the Health Data Science Sandbox' workshop" data-listing-filename-sort="2023-09-07-workshop-conference.qmd">
+<tr data-index="12" data-categories="workshop,conference,AU" data-listing-date-sort="1694044800000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="56" data-listing-title-sort="'Digging into the Health Data Science Sandbox' workshop" data-listing-filename-sort="2023-09-07-workshop-conference.qmd">
 <td>
 <a href="./news/past/2023-09-07-workshop-conference.html" class="title listing-title">‘Digging into the Health Data Science Sandbox’ workshop</a>
 </td>
@@ -617,7 +604,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="12" data-categories="workshop,AU" data-listing-date-sort="1693267200000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="71" data-listing-title-sort="Sandbox workshop in Aarhus" data-listing-filename-sort="2023-08-29-aarhus-workshop.qmd">
+<tr data-index="13" data-categories="workshop,AU" data-listing-date-sort="1693267200000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="71" data-listing-title-sort="Sandbox workshop in Aarhus" data-listing-filename-sort="2023-08-29-aarhus-workshop.qmd">
 <td>
 <a href="./news/past/2023-08-29-aarhus-workshop.html" class="title listing-title">Sandbox workshop in Aarhus</a>
 </td>
@@ -631,7 +618,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Samuele Soraggi</span>
 </td>
 </tr>
-<tr data-index="13" data-categories="workshop,KU,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1687132800000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="68" data-listing-title-sort="Workshop on bulkRNA-seq data" data-listing-filename-sort="2023-06-19-KU-bulk.qmd">
+<tr data-index="14" data-categories="workshop,KU,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1687132800000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="68" data-listing-title-sort="Workshop on bulkRNA-seq data" data-listing-filename-sort="2023-06-19-KU-bulk.qmd">
 <td>
 <a href="./news/past/2023-06-19-KU-bulk.html" class="title listing-title">Workshop on bulkRNA-seq data</a>
 </td>
@@ -645,7 +632,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="14" data-categories="genomics,transcriptomics,proteomics,ucloud,KU,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1685491200000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="82" data-listing-title-sort="Sandbox App updates on UCloud rolled out" data-listing-filename-sort="2023-05-31-rollout-ucloud.qmd">
+<tr data-index="15" data-categories="genomics,transcriptomics,proteomics,ucloud,KU,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1685491200000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="82" data-listing-title-sort="Sandbox App updates on UCloud rolled out" data-listing-filename-sort="2023-05-31-rollout-ucloud.qmd">
 <td>
 <a href="./news/past/2023-05-31-rollout-ucloud.html" class="title listing-title">Sandbox App updates on UCloud rolled out</a>
 </td>
@@ -659,7 +646,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="15" data-categories="workshop,course,KU,nextflow" data-listing-date-sort="1674000000000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="130" data-listing-title-sort="Second bulk RNA-seq course at the University of Copenhagen" data-listing-filename-sort="2023-01-18-bulk-KU.qmd">
+<tr data-index="16" data-categories="workshop,course,KU,nextflow" data-listing-date-sort="1674000000000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="130" data-listing-title-sort="Second bulk RNA-seq course at the University of Copenhagen" data-listing-filename-sort="2023-01-18-bulk-KU.qmd">
 <td>
 <a href="./news/past/2023-01-18-bulk-KU.html" class="title listing-title">Second bulk RNA-seq course at the University of Copenhagen</a>
 </td>
@@ -673,7 +660,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="16" data-categories="courses,population-genomics,personalized-medicine,single-cell,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1673308800000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="325" data-listing-title-sort="Sandbox support for Spring 2023 courses" data-listing-filename-sort="2023-01-10-spring-support.qmd">
+<tr data-index="17" data-categories="courses,population-genomics,personalized-medicine,single-cell,HeaDS,reNEW,transcriptomics" data-listing-date-sort="1673308800000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="325" data-listing-title-sort="Sandbox support for Spring 2023 courses" data-listing-filename-sort="2023-01-10-spring-support.qmd">
 <td>
 <a href="./news/past/2023-01-10-spring-support.html" class="title listing-title">Sandbox support for Spring 2023 courses</a>
 </td>
@@ -687,7 +674,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="17" data-categories="computerome" data-listing-date-sort="1673136000000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="114" data-listing-title-sort="Soft launch of the new Course Platform at Computerome" data-listing-filename-sort="2023-01-08-platform-computerome.qmd">
+<tr data-index="18" data-categories="computerome" data-listing-date-sort="1673136000000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="114" data-listing-title-sort="Soft launch of the new Course Platform at Computerome" data-listing-filename-sort="2023-01-08-platform-computerome.qmd">
 <td>
 <a href="./news/past/2023-01-08-platform-computerome.html" class="title listing-title">Soft launch of the new Course Platform at Computerome</a>
 </td>
@@ -701,7 +688,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jesper R Christiansen</span>
 </td>
 </tr>
-<tr data-index="18" data-categories="AU,statistics,ML" data-listing-date-sort="1669766400000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="25" data-listing-title-sort="Sandbox support for 'Advanced Statistical Learning'" data-listing-filename-sort="2022-11-30-advancedstatlearning.qmd">
+<tr data-index="19" data-categories="AU,statistics,ML" data-listing-date-sort="1669766400000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="25" data-listing-title-sort="Sandbox support for 'Advanced Statistical Learning'" data-listing-filename-sort="2022-11-30-advancedstatlearning.qmd">
 <td>
 <a href="./news/past/2022-11-30-advancedstatlearning.html" class="title listing-title">Sandbox support for ‘Advanced Statistical Learning’</a>
 </td>
@@ -715,7 +702,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Samuele Soraggi</span>
 </td>
 </tr>
-<tr data-index="19" data-categories="bioinformatics,SDU" data-listing-date-sort="1668470400000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="54" data-listing-title-sort="Sandbox support within 'Workshops in Applied Bioinformatics' at SDU" data-listing-filename-sort="2022-11-15-support-bioinf-sdu.qmd">
+<tr data-index="20" data-categories="bioinformatics,SDU" data-listing-date-sort="1668470400000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="54" data-listing-title-sort="Sandbox support within 'Workshops in Applied Bioinformatics' at SDU" data-listing-filename-sort="2022-11-15-support-bioinf-sdu.qmd">
 <td>
 <a href="./news/past/2022-11-15-support-bioinf-sdu.html" class="title listing-title">Sandbox support within ‘Workshops in Applied Bioinformatics’ at SDU</a>
 </td>
@@ -729,7 +716,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jacob Fredegaard Hansen</span>
 </td>
 </tr>
-<tr data-index="20" data-categories="transcriptomics,ucloud" data-listing-date-sort="1668470400000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="49" data-listing-title-sort="Transcriptomics Sandbox app launched on UCloud!" data-listing-filename-sort="2022-12-10-transcriptomics-launch.qmd">
+<tr data-index="21" data-categories="transcriptomics,ucloud" data-listing-date-sort="1668470400000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="49" data-listing-title-sort="Transcriptomics Sandbox app launched on UCloud!" data-listing-filename-sort="2022-12-10-transcriptomics-launch.qmd">
 <td>
 <a href="./news/past/2022-12-10-transcriptomics-launch.html" class="title listing-title">Transcriptomics Sandbox app launched on UCloud!</a>
 </td>
@@ -743,7 +730,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jose AR Herrera</span>
 </td>
 </tr>
-<tr data-index="21" data-categories="genomics,ucloud" data-listing-date-sort="1662422400000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="50" data-listing-title-sort="Genomics Sandbox app launched on UCloud!" data-listing-filename-sort="2022-09-06-genomics-launch.qmd">
+<tr data-index="22" data-categories="genomics,ucloud" data-listing-date-sort="1662422400000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="50" data-listing-title-sort="Genomics Sandbox app launched on UCloud!" data-listing-filename-sort="2022-09-06-genomics-launch.qmd">
 <td>
 <a href="./news/past/2022-09-06-genomics-launch.html" class="title listing-title">Genomics Sandbox app launched on UCloud!</a>
 </td>
@@ -757,7 +744,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Samuele Soraggi</span>
 </td>
 </tr>
-<tr data-index="22" data-categories="transcriptomics,course,KU,HeaDS,reNEW" data-listing-date-sort="1660780800000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="94" data-listing-title-sort="Bulk RNA-seq course at University of Copenhagen" data-listing-filename-sort="2022-08-18-bulk-ku.qmd">
+<tr data-index="23" data-categories="transcriptomics,course,KU,HeaDS,reNEW" data-listing-date-sort="1660780800000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="94" data-listing-title-sort="Bulk RNA-seq course at University of Copenhagen" data-listing-filename-sort="2022-08-18-bulk-ku.qmd">
 <td>
 <a href="./news/past/2022-08-18-bulk-ku.html" class="title listing-title">Bulk RNA-seq course at University of Copenhagen</a>
 </td>
@@ -771,7 +758,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="23" data-categories="genomics,AU" data-listing-date-sort="1654041600000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="77" data-listing-title-sort="Genomics course at Aarhus University" data-listing-filename-sort="2022-06-01-genomics-au.qmd">
+<tr data-index="24" data-categories="genomics,AU" data-listing-date-sort="1654041600000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="77" data-listing-title-sort="Genomics course at Aarhus University" data-listing-filename-sort="2022-06-01-genomics-au.qmd">
 <td>
 <a href="./news/past/2022-06-01-genomics-au.html" class="title listing-title">Genomics course at Aarhus University</a>
 </td>
@@ -785,7 +772,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Samuele Soraggi</span>
 </td>
 </tr>
-<tr data-index="24" data-categories="personalized-medicine,AAU" data-listing-date-sort="1650585600000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="54" data-listing-title-sort="Basics of Personalized Medicine - final wrap-up" data-listing-filename-sort="2022-04-22-basicpm-wrapup.qmd">
+<tr data-index="25" data-categories="personalized-medicine,AAU" data-listing-date-sort="1650585600000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="54" data-listing-title-sort="Basics of Personalized Medicine - final wrap-up" data-listing-filename-sort="2022-04-22-basicpm-wrapup.qmd">
 <td>
 <a href="./news/past/2022-04-22-basicpm-wrapup.html" class="title listing-title">Basics of Personalized Medicine - final wrap-up</a>
 </td>
@@ -799,7 +786,7 @@ <h5 class="no-anchor card-title listing-title">
 <span class="listing-Organizers">Jennifer Bartell</span>
 </td>
 </tr>
-<tr data-index="25" data-categories="personalized-medicine,AAU" data-listing-date-sort="1648771200000" data-listing-file-modified-sort="1725275391088" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="40" data-listing-title-sort="Basics of Personalized Medicine - MSc course" data-listing-filename-sort="2022-01-04-basicpm.qmd">
+<tr data-index="26" data-categories="personalized-medicine,AAU" data-listing-date-sort="1648771200000" data-listing-file-modified-sort="1725344301379" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="40" data-listing-title-sort="Basics of Personalized Medicine - MSc course" data-listing-filename-sort="2022-01-04-basicpm.qmd">
 <td>
 <a href="./news/past/2022-01-04-basicpm.html" class="title listing-title">Basics of Personalized Medicine - MSc course</a>
 </td>
diff --git a/news/upcoming/2024-09-10-scverse2024.html b/news/past/2024-09-10-scverse2024.html
similarity index 99%
rename from news/upcoming/2024-09-10-scverse2024.html
rename to news/past/2024-09-10-scverse2024.html
index 79e827e..6e5229f 100644
--- a/news/upcoming/2024-09-10-scverse2024.html
+++ b/news/past/2024-09-10-scverse2024.html
@@ -8,7 +8,7 @@
 
 <meta name="author" content="Samuele Soraggi">
 <meta name="dcterms.date" content="2024-09-10">
-<meta name="description" content="Conference Woekshop">
+<meta name="description" content="Conference Workshop">
 
 <title>Workshop at scVerse2024 – Health Data Science Sandbox</title>
 <style>
@@ -174,12 +174,13 @@
 <h1 class="title">Workshop at scVerse2024</h1>
   <div class="quarto-categories">
     <div class="quarto-category">single cell omics</div>
+    <div class="quarto-category">dimensionality reduction</div>
   </div>
   </div>
 
 <div>
   <div class="description">
-    Conference Woekshop
+    Conference Workshop
   </div>
 </div>
 
diff --git a/search.json b/search.json
index 4ffd8b7..29783e1 100644
--- a/search.json
+++ b/search.json
@@ -77,32 +77,32 @@
     "text": "This workshop is a regularly hosted summer school to teach NGS data analysis, and is taught by Stig Andersen, Mikkel Schierup, and Samuele Soraggi (supporting via the HDS Sandbox). You can find additional information here."
   },
   {
-    "objectID": "news/past/2023-12-12-SE3D.html",
-    "href": "news/past/2023-12-12-SE3D.html",
-    "title": "NNF Collaborative Data Science award news: the SE3D project!",
+    "objectID": "news/past/2024-09-10-scverse2024.html",
+    "href": "news/past/2024-09-10-scverse2024.html",
+    "title": "Workshop at scVerse2024",
     "section": "",
-    "text": "Today we got the news that we will be able to hire 5 new research staff focused on synthetic health data over the next 4 years. The SE3D project - Synthetic health data: ethical development and deployment via deep learning approaches - will be led by Sandbox PIs Martin Boegsted (AAU) and Anders Krogh (KU) alongside Sandbox project lead Jennifer Bartell (KU) and a new collaborator, Prof. Jan Trzaskowski from AAU Law. We’re really excited to set up this research arm that shares so many Sandbox interests and potential for interaction. The project starts from 1 May 2024, with much thanks to the NNF for their continued support of our ideas. Look out for job ads in the spring from KU and AAU!"
+    "text": "We will run a workshop on dimensionality reduction on single cell data (transcriptomics and spatial) with a focus on - state of the art techniques, - graph optimization VS laplacian operators - how to create interactive webpage plots to document your work in a FAIR and open access manner\nThe workshop will be running first at the conference and afterwards be available at the dedicated webpage for everyone to use. The link to the workshop will work correctly after 10th september 2024."
   },
   {
-    "objectID": "news/past/2023-08-29-aarhus-workshop.html",
-    "href": "news/past/2023-08-29-aarhus-workshop.html",
-    "title": "Sandbox workshop in Aarhus",
+    "objectID": "news/past/2024-02-01-DDSAD3A.html",
+    "href": "news/past/2024-02-01-DDSAD3A.html",
+    "title": "DDSA PhD meetup and D3A conference",
     "section": "",
-    "text": "Sandbox data scientist Samuele Soraggi hosted a three day speed run through Sandbox apps at the Bioinformatics Research Center. The 26 participants joined for genomics, transcriptomics, and/or proteomics app demos depending on their interests. This thorough omics demo had maxed out participant sign-ups and an enthusiastic crew enjoyed the sessions alongside a bit of networking across disciplines. We plan to host more of these type of workshops given the event’s success!"
+    "text": "Several Sandbox staff represented the project at both the DDSA PhD Meetup with a practical presentation on research data management and with posters at D3A, the national data science meeting. It was nice to meet up in person and also make new connections with the excellent cadre of conference attendees. Thanks to the DDSA secretariat for their invitation and organizational efforts."
   },
   {
-    "objectID": "news/upcoming/2024-11-15-hpcPipes.html",
-    "href": "news/upcoming/2024-11-15-hpcPipes.html",
-    "title": "HPC Pipes",
+    "objectID": "news/past/2022-11-15-support-bioinf-sdu.html",
+    "href": "news/past/2022-11-15-support-bioinf-sdu.html",
+    "title": "Sandbox support within ‘Workshops in Applied Bioinformatics’ at SDU",
     "section": "",
-    "text": "Sign-up\nThe course HPC-Pipes introduces best practices for setting up, running, and sharing reproducible bioinformatics pipelines and workflows. Rather than instruct on the whys and wherefores of using particular tools for a bioinformatics analysis, we will cover the general process of building a robust pipeline (regardless of data type) using workflow languages, environment/package managers, optimized HPC resources, and FAIRly managed data and tools. On course completion, participants will be able to use this knowledge to design their own custom pipelines with tools appropriate for their individual analysis needs.\nThe course will provide guidance on how to automate data analysis using common workflow languages such as Snakemake or Nextflow. Subsequently, we will delve into ensuring the reproducibility of pipelines and explore available options. Participants will learn how to share their data analysis and software with the research community. We will also delve into different strategies for managing the produced research data. This includes addressing the challenges posed by large volumes of data and exploring computational approaches that aid in data organization, documentation, processing, analysis, storing, sharing, and preservation. These discussions will encompass the reasons behind the increasing popularity of Docker and other containers, along with demonstrations on how to effectively utilize package and environment managers like Conda to control the software environment within a workflow. Finally, participants will learn how to manage and optimize their pipeline projects on HPC platforms, using compute resources efficiently."
+    "text": "Sandbox data scientist Jacob Fredegaard Hansen created a tutorial on how to use ColabFold for a one day workshop as part of the ‘Workshops in Applied Bioinformatics’ series taught by Sandbox collaborator Veit Schwammle. The material is accessible on the Sandbox website (see Modules, Proteomics) for any UCloud user alongside the UCloud ColabFold App."
   },
   {
-    "objectID": "news/upcoming/2024-11-18-bulk.html",
-    "href": "news/upcoming/2024-11-18-bulk.html",
-    "title": "Bulk RNAseq analysis",
+    "objectID": "news/upcoming/2024-10-30-hpcLaunch.html",
+    "href": "news/upcoming/2024-10-30-hpcLaunch.html",
+    "title": "HPC launch",
     "section": "",
-    "text": "Sign-up\nThis workshop contains a basic tutorial on how to approach bioinformatics analyses of bulk RNAseq data, starting from the count matrix.\nBy the end of this workshop, you will be able to:\n\nGain insight into how to design an RNA-seq experiment\nPreprocess sequencing reads\nAnalyze bulk RNAseq data using the R package DESeq2\nKnow best practices for performing Differential Expression Analysis\nAnnotate and interpret their results"
+    "text": "Sign-up\nThe goal of the course HPC-Launch is to support the launch (and/or reconfiguration) of health data projects from an efficient and modern computing and data management perspective. Targeting trainees and researchers in bioinformatics and large-scale health records, the course will consist of two modules: High-Performance Computing (HPC) and Research Data management (RDM). With the HPC module, we want to expand understanding and efficient use of HPC resources for complex health data science projects. We will fill gaps in technical understanding for beginner to intermediate users of supercomputing platforms and share up-to-date information on computing resources available to Danish researchers and how to get access. With the RDM module, we will introduce the importance of research data management practices and demonstrate practical tips and tools for its implementation at a local research group level. Overall, the course will be a mix of theory, discussion of real-world use cases and participant needs, and active practice/exercises conducted on the HPC platform UCloud (SDU) using bash and relevant IDEs."
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-    "text": "Sandbox data scientists routinely lead or contribute to courses and workshops at host universities in Denmark. Check out upcoming events here! All our past events are listed in the table below.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nWorkshop at scVerse2024\n\n\n\nsingle cell omics\n\n\n\nConference Woekshop\n\n\n\nSep 10, 2024\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nHPC launch\n\n\n\nHPC\n\n\nRDM\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nOct 30, 2024\n\n\n\n\n\n\n\n\n\n\n\n\nHPC Pipes\n\n\n\nsnakemake\n\n\nconda\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nNov 4, 2024\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nBulk RNAseq analysis\n\n\n\nBulk RNAseq\n\n\nnf-core\n\n\nnextflow\n\n\n\nClick to sign-up\n\n\n\nNov 18, 2024\n\n\n\n\n\n\n\n\nNo matching items\n\n\n\n   \n     \n     \n       Order By\n       Default\n         \n          Event title\n        \n     \n  \n    \n      \n      \n    \n\n\n\n\n\nEvent title\n\n\nDates\n\n\nLocation\n\n\nOrganizers\n\n\n\n\n\n\nABC - Accessible Bioinformatics Cafe in Aarhus\n\n\n \n\n\n \n\n\nSamuele Soraggi\n\n\n\n\nHow I learned to stop worrying and love RDM\n\n\n21 August 2024\n\n\nADBi Conference\n\n\nJennifer Bartell & Alba RM\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n01-05 July 2024\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop: Digging into the Health Data Science Sandbox\n\n\n18-19 April 2024\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nCourse support at SDU\n\n\n9 February 2024\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nDDSA PhD meetup and D3A conference\n\n\n1 February 2024\n\n\nDDSA\n\n\nJennifer Bartell\n\n\n\n\nA primer for Synthetic health data\n\n\n31 January 2024\n\n\n \n\n\nJennifer Bartell\n\n\n\n\nNNF Collaborative Data Science award news: the SE3D project!\n\n\n12 December 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nUpdates from SDU\n\n\n9 November 2023\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nA course on RDS for NGS data\n\n\n7 November 2023\n\n\nDTU\n\n\nJose AR Herrera\n\n\n\n\nFrom Data Chaos to Data Harmony\n\n\n7 November 2023\n\n\nDeiC conference\n\n\nJennifer Bartell\n\n\n\n\n‘Digging into the Health Data Science Sandbox’ workshop\n\n\n7 September 2023\n\n\nAU\n\n\nJennifer Bartell\n\n\n\n\nSandbox workshop in Aarhus\n\n\n29 August 2023\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop on bulkRNA-seq data\n\n\n19 June 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox App updates on UCloud rolled out\n\n\n31 May 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSecond bulk RNA-seq course at the University of Copenhagen\n\n\n18 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox support for Spring 2023 courses\n\n\n10 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSoft launch of the new Course Platform at Computerome\n\n\n8 January 2023\n\n\nKU\n\n\nJesper R Christiansen\n\n\n\n\nSandbox support for ‘Advanced Statistical Learning’\n\n\n30 November 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nSandbox support within ‘Workshops in Applied Bioinformatics’ at SDU\n\n\n15 November 2022\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nTranscriptomics Sandbox app launched on UCloud!\n\n\n15 November 2022\n\n\nKU\n\n\nJose AR Herrera\n\n\n\n\nGenomics Sandbox app launched on UCloud!\n\n\n6 September 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBulk RNA-seq course at University of Copenhagen\n\n\n18 August 2022\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nGenomics course at Aarhus University\n\n\n1 June 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBasics of Personalized Medicine - final wrap-up\n\n\n22 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\nBasics of Personalized Medicine - MSc course\n\n\n1 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\n\nNo matching items"
+    "text": "Sandbox data scientists routinely lead or contribute to courses and workshops at host universities in Denmark. Check out upcoming events here! All our past events are listed in the table below.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nHPC launch\n\n\n\nHPC\n\n\nRDM\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nOct 30, 2024\n\n\n\n\n\n\n\n\n\n\n\n\nHPC Pipes\n\n\n\nsnakemake\n\n\nconda\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nNov 4, 2024\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nBulk RNAseq analysis\n\n\n\nBulk RNAseq\n\n\nnf-core\n\n\nnextflow\n\n\n\nClick to sign-up\n\n\n\nNov 18, 2024\n\n\n\n\n\n\n\n\nNo matching items\n\n\n\n   \n     \n     \n       Order By\n       Default\n         \n          Event title\n        \n     \n  \n    \n      \n      \n    \n\n\n\n\n\nEvent title\n\n\nDates\n\n\nLocation\n\n\nOrganizers\n\n\n\n\n\n\nWorkshop at scVerse2024\n\n\n \n\n\nTechnical University of Munich\n\n\nSamuele Soraggi\n\n\n\n\nABC - Accessible Bioinformatics Cafe in Aarhus\n\n\n \n\n\nAarhus University\n\n\nSamuele Soraggi\n\n\n\n\nHow I learned to stop worrying and love RDM\n\n\n21 August 2024\n\n\nADBi Conference\n\n\nJennifer Bartell & Alba RM\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n01-05 July 2024\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop: Digging into the Health Data Science Sandbox\n\n\n18-19 April 2024\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nCourse support at SDU\n\n\n9 February 2024\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nDDSA PhD meetup and D3A conference\n\n\n1 February 2024\n\n\nDDSA\n\n\nJennifer Bartell\n\n\n\n\nA primer for Synthetic health data\n\n\n31 January 2024\n\n\n \n\n\nJennifer Bartell\n\n\n\n\nNNF Collaborative Data Science award news: the SE3D project!\n\n\n12 December 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nUpdates from SDU\n\n\n9 November 2023\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nA course on RDS for NGS data\n\n\n7 November 2023\n\n\nDTU\n\n\nJose AR Herrera\n\n\n\n\nFrom Data Chaos to Data Harmony\n\n\n7 November 2023\n\n\nDeiC conference\n\n\nJennifer Bartell\n\n\n\n\n‘Digging into the Health Data Science Sandbox’ workshop\n\n\n7 September 2023\n\n\nAU\n\n\nJennifer Bartell\n\n\n\n\nSandbox workshop in Aarhus\n\n\n29 August 2023\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop on bulkRNA-seq data\n\n\n19 June 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox App updates on UCloud rolled out\n\n\n31 May 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSecond bulk RNA-seq course at the University of Copenhagen\n\n\n18 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox support for Spring 2023 courses\n\n\n10 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSoft launch of the new Course Platform at Computerome\n\n\n8 January 2023\n\n\nKU\n\n\nJesper R Christiansen\n\n\n\n\nSandbox support for ‘Advanced Statistical Learning’\n\n\n30 November 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nSandbox support within ‘Workshops in Applied Bioinformatics’ at SDU\n\n\n15 November 2022\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nTranscriptomics Sandbox app launched on UCloud!\n\n\n15 November 2022\n\n\nKU\n\n\nJose AR Herrera\n\n\n\n\nGenomics Sandbox app launched on UCloud!\n\n\n6 September 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBulk RNA-seq course at University of Copenhagen\n\n\n18 August 2022\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nGenomics course at Aarhus University\n\n\n1 June 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBasics of Personalized Medicine - final wrap-up\n\n\n22 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\nBasics of Personalized Medicine - MSc course\n\n\n1 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\n\nNo matching items"
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@@ -658,32 +658,32 @@
     "text": "Discussion and feedback\nWe hope you enjoyed the live demo. If you have broader questions, suggestions, or concerns, now is the time to raise them! If you are totally toast for the day, remember that you can check out longer versions of our tutorials as well as other topics and tools in each of the Sandbox modules or join us for a multi-day in person course.\nAs data scientists, we also would be really happy for some quantifiable info and feedback - we want to build things that the Danish health data science community is excited to use. Please answer these 5 questions for us before you head out for the day (link activated on day of the workshop).\n\nNice meeting you and we hope to see you again!"
   },
   {
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-    "href": "news/upcoming/2024-09-10-scverse2024.html",
-    "title": "Workshop at scVerse2024",
+    "objectID": "news/upcoming/2024-11-18-bulk.html",
+    "href": "news/upcoming/2024-11-18-bulk.html",
+    "title": "Bulk RNAseq analysis",
     "section": "",
-    "text": "We will run a workshop on dimensionality reduction on single cell data (transcriptomics and spatial) with a focus on - state of the art techniques, - graph optimization VS laplacian operators - how to create interactive webpage plots to document your work in a FAIR and open access manner\nThe workshop will be running first at the conference and afterwards be available at the dedicated webpage for everyone to use. The link to the workshop will work correctly after 10th september 2024."
+    "text": "Sign-up\nThis workshop contains a basic tutorial on how to approach bioinformatics analyses of bulk RNAseq data, starting from the count matrix.\nBy the end of this workshop, you will be able to:\n\nGain insight into how to design an RNA-seq experiment\nPreprocess sequencing reads\nAnalyze bulk RNAseq data using the R package DESeq2\nKnow best practices for performing Differential Expression Analysis\nAnnotate and interpret their results"
   },
   {
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-    "href": "news/upcoming/2024-10-30-hpcLaunch.html",
-    "title": "HPC launch",
+    "objectID": "news/upcoming/2024-11-15-hpcPipes.html",
+    "href": "news/upcoming/2024-11-15-hpcPipes.html",
+    "title": "HPC Pipes",
     "section": "",
-    "text": "Sign-up\nThe goal of the course HPC-Launch is to support the launch (and/or reconfiguration) of health data projects from an efficient and modern computing and data management perspective. Targeting trainees and researchers in bioinformatics and large-scale health records, the course will consist of two modules: High-Performance Computing (HPC) and Research Data management (RDM). With the HPC module, we want to expand understanding and efficient use of HPC resources for complex health data science projects. We will fill gaps in technical understanding for beginner to intermediate users of supercomputing platforms and share up-to-date information on computing resources available to Danish researchers and how to get access. With the RDM module, we will introduce the importance of research data management practices and demonstrate practical tips and tools for its implementation at a local research group level. Overall, the course will be a mix of theory, discussion of real-world use cases and participant needs, and active practice/exercises conducted on the HPC platform UCloud (SDU) using bash and relevant IDEs."
+    "text": "Sign-up\nThe course HPC-Pipes introduces best practices for setting up, running, and sharing reproducible bioinformatics pipelines and workflows. Rather than instruct on the whys and wherefores of using particular tools for a bioinformatics analysis, we will cover the general process of building a robust pipeline (regardless of data type) using workflow languages, environment/package managers, optimized HPC resources, and FAIRly managed data and tools. On course completion, participants will be able to use this knowledge to design their own custom pipelines with tools appropriate for their individual analysis needs.\nThe course will provide guidance on how to automate data analysis using common workflow languages such as Snakemake or Nextflow. Subsequently, we will delve into ensuring the reproducibility of pipelines and explore available options. Participants will learn how to share their data analysis and software with the research community. We will also delve into different strategies for managing the produced research data. This includes addressing the challenges posed by large volumes of data and exploring computational approaches that aid in data organization, documentation, processing, analysis, storing, sharing, and preservation. These discussions will encompass the reasons behind the increasing popularity of Docker and other containers, along with demonstrations on how to effectively utilize package and environment managers like Conda to control the software environment within a workflow. Finally, participants will learn how to manage and optimize their pipeline projects on HPC platforms, using compute resources efficiently."
   },
   {
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-    "href": "news/past/2022-11-15-support-bioinf-sdu.html",
-    "title": "Sandbox support within ‘Workshops in Applied Bioinformatics’ at SDU",
+    "objectID": "news/past/2023-08-29-aarhus-workshop.html",
+    "href": "news/past/2023-08-29-aarhus-workshop.html",
+    "title": "Sandbox workshop in Aarhus",
     "section": "",
-    "text": "Sandbox data scientist Jacob Fredegaard Hansen created a tutorial on how to use ColabFold for a one day workshop as part of the ‘Workshops in Applied Bioinformatics’ series taught by Sandbox collaborator Veit Schwammle. The material is accessible on the Sandbox website (see Modules, Proteomics) for any UCloud user alongside the UCloud ColabFold App."
+    "text": "Sandbox data scientist Samuele Soraggi hosted a three day speed run through Sandbox apps at the Bioinformatics Research Center. The 26 participants joined for genomics, transcriptomics, and/or proteomics app demos depending on their interests. This thorough omics demo had maxed out participant sign-ups and an enthusiastic crew enjoyed the sessions alongside a bit of networking across disciplines. We plan to host more of these type of workshops given the event’s success!"
   },
   {
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-    "href": "news/past/2024-02-01-DDSAD3A.html",
-    "title": "DDSA PhD meetup and D3A conference",
+    "objectID": "news/past/2023-12-12-SE3D.html",
+    "href": "news/past/2023-12-12-SE3D.html",
+    "title": "NNF Collaborative Data Science award news: the SE3D project!",
     "section": "",
-    "text": "Several Sandbox staff represented the project at both the DDSA PhD Meetup with a practical presentation on research data management and with posters at D3A, the national data science meeting. It was nice to meet up in person and also make new connections with the excellent cadre of conference attendees. Thanks to the DDSA secretariat for their invitation and organizational efforts."
+    "text": "Today we got the news that we will be able to hire 5 new research staff focused on synthetic health data over the next 4 years. The SE3D project - Synthetic health data: ethical development and deployment via deep learning approaches - will be led by Sandbox PIs Martin Boegsted (AAU) and Anders Krogh (KU) alongside Sandbox project lead Jennifer Bartell (KU) and a new collaborator, Prof. Jan Trzaskowski from AAU Law. We’re really excited to set up this research arm that shares so many Sandbox interests and potential for interaction. The project starts from 1 May 2024, with much thanks to the NNF for their continued support of our ideas. Look out for job ads in the spring from KU and AAU!"
   },
   {
     "objectID": "news/past/2023-01-18-bulk-KU.html",
diff --git a/sitemap.xml b/sitemap.xml
index fea28bc..60aef82 100644
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+    <loc>https://hds-sandbox.github.io/news/past/2024-09-10-scverse2024.html</loc>
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   </url>
   <url>
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-    <lastmod>2024-09-02T11:09:51.092Z</lastmod>
+    <loc>https://hds-sandbox.github.io/news/past/2022-11-15-support-bioinf-sdu.html</loc>
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   <url>
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     <loc>https://hds-sandbox.github.io/workshop/workshop_june24.html</loc>
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   <url>
     <loc>https://hds-sandbox.github.io/workshop/workshop_conf.html</loc>
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