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Merge pull request #3 from albarema/main
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jenbartell authored Feb 28, 2024
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Expand Up @@ -40,9 +40,9 @@ On the left side, you can see the structure of the project (content changes when
- **Apps**: gain access to the apps catalog on ucloud. We refer to [apps](https://docs.cloud.sdu.dk/Apps/type.html) as the software applications that can be deployed on the cloud. It's recommended to explore the featured ones. Use the search bar to find the *sandbox apps*
- **Runs**: from where you submit your jobs and past runs information

> [!IMPORTANT]
> Don't forget to **accept the invitation** to access new projects.
> Remember to **switch projects** to access other files and resources. Test switching among projects and observe how the dashboard changes.
!!! important
Don't forget to **accept the invitation** to access new projects.
Remember to **switch projects** to access other files and resources. Test switching among projects and observe how the dashboard changes.

At the bottom left corner, you will find your user ID, which you may need to provide once the course starts or for future collaborations, such as being added to other people's projects. You can also find here [UCloud docs](https://docs.cloud.sdu.dk/).

Expand All @@ -56,8 +56,8 @@ Then click on Apps in the left panel to investigate what tools and environments

> ![](../assets/images/apps.png)
> [!TIP]
> Mark them as favorites so they appear on your dashboard.
!!! tip
Mark them as favorites so they appear on your dashboard.

### **Step 4**

Expand All @@ -74,9 +74,9 @@ In this example, we configure our session by:
5. optional: add folders to access while in this job
6. hitting submit (there may be a wait)

> [!IMPORTANT]
> The first 3 steps set up our computing resources for the period we want to work and can be customized as needed. However, **only step 2 can be modified after submitting the job**. For some of the Sandbox apps, you might want to select folders (Home and the Notebooks/Data from the module to avoid downloading it every time you start a new job). If you are in doubt, read the documentation specific to the app you are interested in.
> Select the version of the app (if in doubt, use the latest one). This allows you to run specific versions of software.
!!! important
The first 3 steps set up our computing resources for the period we want to work and can be customized as needed. However, **only step 2 can be modified after submitting the job**. For some of the Sandbox apps, you might want to select folders (Home and the Notebooks/Data from the module to avoid downloading it every time you start a new job). If you are in doubt, read the documentation specific to the app you are interested in.
Select the version of the app (if in doubt, use the latest one). This allows you to run specific versions of software.

There are different types of apps, and therefore, interfaces. Some, like RStudio or Jupyter Notebooks, have their own graphical user interface, whereas others are command-line interfaces. Lastly, you can also deploy a virtual desktop and virtual machine, which allow you to spin up a virtual computer.

Expand All @@ -100,8 +100,8 @@ You can navigate through the different folders and start running the Python note
If you are an advanced user, you can also create your own Python files and select the kernel *NGS (python)* to use the pre-installed software. Learn how to manage (upload and download new data) and share files that you have created/developed with collaborators [here](https://docs.cloud.sdu.dk/tutorials/tutorial1.html).

> [!TIP]
> Create your own directories to save the output of your jobs. You will be able to access them later in your project folders under the resources you are using
> If you haven't created any directories, look for the generated files under a folder with the same name as the job name you used.
!!! tip
Create your own directories to save the output of your jobs. You will be able to access them later in your project folders under the resources you are using
If you haven't created any directories, look for the generated files under a folder with the same name as the job name you used.

You are ready to start using Ucloud and the sandbox tools!

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