From 55d4280ea53681a67d847f93466a9ebd875591ab Mon Sep 17 00:00:00 2001 From: jenbartell Date: Wed, 25 Oct 2023 15:44:23 +0200 Subject: [PATCH] news update --- develop/assets/upcomingcourses.csv | 3 +-- develop/news/news.md | 9 +++++++++ 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/develop/assets/upcomingcourses.csv b/develop/assets/upcomingcourses.csv index 4d3140da..2adc67aa 100644 --- a/develop/assets/upcomingcourses.csv +++ b/develop/assets/upcomingcourses.csv @@ -1,5 +1,4 @@ Workshop title,Dates,Location,Organizers,Sign-up link -Workshop: Training modules in the Health Data Science Sandbox,29-31 August 2023,"BIRC, Aarhus University",HDS Sandbox (Samuele Soraggi),email [the Sandbox]((mailto:nhds_sandbox@sund.ku.dk)) -Dig into the Health Data Science Sandbox,"Thursday, 7 September 2023","Danish Bioinformatics Conference, Aarhus University",HDS Sandbox,[https://eventsignup.ku.dk/elixirdenmark-danishbioinformaticsconference/](https://eventsignup.ku.dk/elixirdenmark-danishbioinformaticsconference/) +Workshop: Dig into the Health Data Science Sandbox,"Friday, 6 December 2023","AAU SUND, Aalborg University",HDS Sandbox (Jakob Skelmose & Samuele Soraggi),email [the Sandbox]((mailto:nhds_sandbox@sund.ku.dk)) "Single-cell, Single-molecule: The Next Level in Cell Biology",Spring Semester 2024,Aarhus University,"Stig Andersen, Mikkel Schierup, Victoria Birkedal, and Thomas Boesen with computational support from the HDS Sandbox (Samuele Soraggi)",[AU course catalog entry](https://kursuskatalog.au.dk/en/course/118020/Single-cell-Single-molecule-The-Next-Level-in-Cell-Biology) Research data management for NGS data,Spring Semester 2024,University of Copenhagen,HDS Sandbox (Alex Romero Herrera),TBA \ No newline at end of file diff --git a/develop/news/news.md b/develop/news/news.md index 19ec9d85..4634e124 100644 --- a/develop/news/news.md +++ b/develop/news/news.md @@ -22,6 +22,15 @@ Sandbox data scientists routinely lead or contribute to courses and workshops at

News & Updates

+#### 25/10/2023 - 'Research Data Management for NGS Data' with DeiC (Technical University of Denmark) +Sandbox data scientist Jose Alejandro Romero Herrera ran the first instance of a new module on research data management practices he developed specifically for NGS data. Twelve participants were hosted in conjunction with DeiC at DTU, and were exposed to tools like bash, conda, git, and cookie cutter in their quest to organize their omics data. + +#### 07/09/2023 - 'Digging into the Health Data Science Sandbox' at the Danish Bioinformatics Conference 2023 (Aarhus University) +The full team of Sandbox data scientists hosted a 4 hour workshop at the Danish Bioinformatics conference where they gave a taster session of each of our 3 omics apps. We learned that multi-omics analysis were a substantial draw for the crowd at the DBC and are making plans to address this interest in future events. + +#### 29/08/2023 - 2 days of Sandbox intro at Aarhus University +Sandbox data scientist Samuele Soraggi hosted a three day speed run through Sandbox apps at the Bioinformatics Research Center. The 26 participants joined for genomics, transcriptomics, and/or proteomics app demos depending on their interests. This thorough omics demo had maxed out participant sign-ups and an enthusiastic crew enjoyed the sessions alongside a bit of networking across disciplines. We plan to host more of these type of workshops given the event's success! + #### 19/06/2023 - 3 days of bulk RNA-seq at the University of Copenhagen Our teaching team (from the Sandbox, the HeaDS DataLab, and reNEW's genomics platform) hosted another 3 day workshop on bulk RNA-seq. The 34 participants used the updated version of the UCloud Transcriptomics App which provided the smoothest experience yet for both trainers and trainees. A new goal for the next course run is to add a student project to support independent implementation and exploration of the course content.