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access/UCloud.html

@@ -240,7 +240,7 @@ <h3 class="anchored" data-anchor-id="step-2"><strong>Step 2</strong></h3>
 <p>For this example, we select <code>Sandbox RNAseq workshop</code>.</p>
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-<p><a href="../images/workspace.png" class="lightbox" data-gallery="quarto-lightbox-gallery-1" data-glightbox="description: .lightbox-desc-1" title="Dashboard: your workspace"><img src="../images/workspace.png" class="black-box img-fluid figure-img" alt="Screenshot of your dashboard"></a></p>
+<p><a href="../images/workspace.png" class="lightbox" data-glightbox="description: .lightbox-desc-1" data-gallery="quarto-lightbox-gallery-1" title="Dashboard: your workspace"><img src="../images/workspace.png" class="black-box img-fluid figure-img" alt="Screenshot of your dashboard"></a></p>
 <figcaption>Dashboard: your workspace</figcaption>
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@@ -268,7 +268,7 @@ <h3 class="anchored" data-anchor-id="step-2"><strong>Step 2</strong></h3>
 <p>At the bottom left corner, you will find your user ID, which you may need to provide once the course starts or for future collaborations, such as being added to other people’s projects. You can also find it on <a href="https://docs.cloud.sdu.dk/">UCloud docs</a>.</p>
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-<p><a href="../images/menu_avatar.png" class="lightbox" data-gallery="quarto-lightbox-gallery-2" data-glightbox="description: .lightbox-desc-2" title="Dashboard: bottom-left menu"><img src="../images/menu_avatar.png" class="black-box left img-fluid figure-img" alt="Bottom-left menu" width="300"></a></p>
+<p><a href="../images/menu_avatar.png" class="lightbox" data-glightbox="description: .lightbox-desc-2" data-gallery="quarto-lightbox-gallery-2" title="Dashboard: bottom-left menu"><img src="../images/menu_avatar.png" class="black-box left img-fluid figure-img" alt="Bottom-left menu" width="300"></a></p>
 <figcaption>Dashboard: bottom-left menu</figcaption>
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@@ -283,7 +283,7 @@ <h3 class="anchored" data-anchor-id="step-3"><strong>Step 3</strong></h3>
 <p>Then click on Apps in the left panel to investigate what tools and environments you can use (orange square). The easiest way to find Sandbox resources is to search via the toolbar (red circle). In this example, we’ll select the Genomics Sandbox (which will bring you to the submission screen).</p>
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-<p><a href="../images/apps.png" class="lightbox" data-gallery="quarto-lightbox-gallery-3" data-glightbox="description: .lightbox-desc-3" title="Dashboard: all apps"><img src="../images/apps.png" class="black-box img-fluid figure-img" alt="Screenshot of apps dashboard"></a></p>
+<p><a href="../images/apps.png" class="lightbox" data-glightbox="description: .lightbox-desc-3" data-gallery="quarto-lightbox-gallery-3" title="Dashboard: all apps"><img src="../images/apps.png" class="black-box img-fluid figure-img" alt="Screenshot of apps dashboard"></a></p>
 <figcaption>Dashboard: all apps</figcaption>
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@@ -306,7 +306,7 @@ <h3 class="anchored" data-anchor-id="step-4"><strong>Step 4</strong></h3>
 <p>Click on the app button to get into the settings window. First, we recommend reading the documentation of the app (step 2). Then, you can configure the app as shown below, or be provided with a configuration file made available in a workshop’s project folders (<code>import parameters</code>) which will take care of everything for you.</p>
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-<p><a href="../images/configuring_job.png" class="lightbox" data-gallery="quarto-lightbox-gallery-4" data-glightbox="description: .lightbox-desc-4" title="Dashboard jobs: configuration step"><img src="../images/configuring_job.png" class="black-box img-fluid figure-img" alt="Screenshot of how to configure your job"></a></p>
+<p><a href="../images/configuring_job.png" class="lightbox" data-glightbox="description: .lightbox-desc-4" data-gallery="quarto-lightbox-gallery-4" title="Dashboard jobs: configuration step"><img src="../images/configuring_job.png" class="black-box img-fluid figure-img" alt="Screenshot of how to configure your job"></a></p>
 <figcaption>Dashboard jobs: configuration step</figcaption>
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@@ -341,7 +341,7 @@ <h3 class="anchored" data-anchor-id="step-5"><strong>Step 5</strong></h3>
 <p>Wait to go through the queue. When the session starts, the timer begins to count down. In a couple of minutes, you should be able to open the interface through the button (<code>Open interface</code>) in a new window (refresh the window if needed).</p>
 <div class="quarto-figure quarto-figure-center">
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-<p><a href="../images/job_dashboard.png" class="lightbox" data-gallery="quarto-lightbox-gallery-5" data-glightbox="description: .lightbox-desc-5" title="Dashboard jobs: running the app"><img src="../images/job_dashboard.png" class="black-box img-fluid figure-img" alt="Screenshot of dashboard running app"></a></p>
+<p><a href="../images/job_dashboard.png" class="lightbox" data-glightbox="description: .lightbox-desc-5" data-gallery="quarto-lightbox-gallery-5" title="Dashboard jobs: running the app"><img src="../images/job_dashboard.png" class="black-box img-fluid figure-img" alt="Screenshot of dashboard running app"></a></p>
 <figcaption>Dashboard jobs: running the app</figcaption>
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@@ -352,21 +352,21 @@ <h3 class="anchored" data-anchor-id="step-6"><strong>Step 6</strong></h3>
 <p>Different apps might employ distinct development environments, so your interface experience could vary accordingly. If you’re utilizing an RStudio-based application, like the transcriptomics tool, your interface will launch in a new tab, resembling the image provided below. Simply navigate through the folders to locate and access the R Markdown notebooks.</p>
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-<p><a href="../images/interface_rstudio.png" class="lightbox" data-gallery="quarto-lightbox-gallery-6" data-glightbox="description: .lightbox-desc-6" title="RStudio interface: running the app"><img src="../images/interface_rstudio.png" class="black-box img-fluid figure-img" alt="Screenshot of RStudio interface"></a></p>
+<p><a href="../images/interface_rstudio.png" class="lightbox" data-glightbox="description: .lightbox-desc-6" data-gallery="quarto-lightbox-gallery-6" title="RStudio interface: running the app"><img src="../images/interface_rstudio.png" class="black-box img-fluid figure-img" alt="Screenshot of RStudio interface"></a></p>
 <figcaption>RStudio interface: running the app</figcaption>
 </figure>
 </div>
 <p>If you are testing a JupyterLab-based application, such as the genomic app, your interface should look like in the image below. In this case, you will be working from <a href="https://jupyter.org/">JupyterLab</a>. You can open Jupyter Notebooks (yellow square), R studio (blue square) or a terminal (black square) among others. In this case, the highlighted buttons (under <code>Notebooks</code>) have all the software and packages that you will need pre-installed (this is not the case with Python 3 to the left).</p>
 <div class="quarto-figure quarto-figure-center">
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-<p><a href="../images/interface_jupyterlab.png" class="lightbox" data-gallery="quarto-lightbox-gallery-7" data-glightbox="description: .lightbox-desc-7" title="JupyterLab interface: running the app"><img src="../images/interface_jupyterlab.png" class="black-box img-fluid figure-img" alt="Screenshot of JupyterLab interface"></a></p>
+<p><a href="../images/interface_jupyterlab.png" class="lightbox" data-glightbox="description: .lightbox-desc-7" data-gallery="quarto-lightbox-gallery-7" title="JupyterLab interface: running the app"><img src="../images/interface_jupyterlab.png" class="black-box img-fluid figure-img" alt="Screenshot of JupyterLab interface"></a></p>
 <figcaption>JupyterLab interface: running the app</figcaption>
 </figure>
 </div>
 <p>You can navigate through the different folders and start running the Python notebooks (orange square).</p>
 <div class="quarto-figure quarto-figure-center">
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-<p><a href="../images/opening_notebook.png" class="lightbox" data-gallery="quarto-lightbox-gallery-8" data-glightbox="description: .lightbox-desc-8" title="JupyterLab interface: opening notebook"><img src="../images/opening_notebook.png" class="black-box img-fluid figure-img" alt="Screenshot of Jupyter Notebook"></a></p>
+<p><a href="../images/opening_notebook.png" class="lightbox" data-glightbox="description: .lightbox-desc-8" data-gallery="quarto-lightbox-gallery-8" title="JupyterLab interface: opening notebook"><img src="../images/opening_notebook.png" class="black-box img-fluid figure-img" alt="Screenshot of Jupyter Notebook"></a></p>
 <figcaption>JupyterLab interface: opening notebook</figcaption>
 </figure>
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contact/contact.html

@@ -323,7 +323,7 @@ <h1 class="title">Contact the Sandbox</h1>
 
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