diff --git a/.nojekyll b/.nojekyll index e8b6c224..b33f62f9 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -0dadb9e5 \ No newline at end of file +7470256b \ No newline at end of file diff --git a/about/about.html b/about/about.html index a661cd7e..a661484a 100644 --- a/about/about.html +++ b/about/about.html @@ -247,7 +247,7 @@

Contact the sandbox team

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diff --git a/datasets/synthdata.html b/datasets/synthdata.html index 45da6a27..dae11dde 100644 --- a/datasets/synthdata.html +++ b/datasets/synthdata.html @@ -227,7 +227,7 @@

Generating synth

Evaluating synthetic data

There are 3 key principles to consider when judging the overall quality of a synthetic dataset: fidelity to the original dataset, risk to privacy, and prediction utility. Fidelity and utility are often grouped together as similarity to the original data which exists in a trade-off with privacy - the more similar your synthetic dataset to the original, the higher your risk to patient privacy. However, the distinction between them is important as they can be achieved independently of each other depending on the project frame. Fidelity refers to reproduction of the multivariate shape and structure of the original data (including complex nonlinear relationships) while utility refers to how well the synthetic dataset matches the predictive accuracy of the original dataset. Risk to privacy includes both risk of patient reidentification and risk of sensitive information disclosure about a patient. There are many proposed evaluation metrics for measuring different aspects of these three qualities. We are actively investigating the performance of these metrics against our different datasets.

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We should point out that while using quantitative metrics to assess privacy preservation is a critical step in creating a synthetic dataset, positive results do not absolve us from any concerns regarding risk to privacy in the synthetic data. Regulatory guidelines regarding the safety of synthetic data and the ability to openly share it are extremely unclear. No authorities have specified quantitative cut-offs using these metrics that enable open release, for example. For this reason, we have developed our own internal guidelines for how to handle this aspect of the project, which are based on a comprehensive examination of relevant EU and Danish legislation (i.e. the GDPR, the Artificial Intelligence Act, the Danish Health Law, and the Danish Data Protection Act). We continue work on synthesis with hope that new legislation such as the development of the European Health Data Space will provide further guidance in the future.

diff --git a/images/SynthDataQualities.png b/images/SynthDataQualities.png new file mode 100644 index 00000000..9428b31d Binary files /dev/null and b/images/SynthDataQualities.png differ diff --git a/news.html b/news.html index a4325e72..629a3e8c 100644 --- a/news.html +++ b/news.html @@ -73,7 +73,7 @@ } const options = { - valueNames: ['listing-image','listing-date','listing-title','listing-author','listing-categories',{ data: ['index'] },{ data: ['categories'] },{ data: ['listing-date-sort'] },{ data: ['listing-title-sort'] }], + valueNames: ['listing-date','listing-title','listing-author',{ data: ['index'] },{ data: ['categories'] },{ data: ['listing-date-sort'] },{ data: ['listing-title-sort'] }], searchColumns: ["listing-date","listing-title","listing-author"], }; @@ -241,8 +241,6 @@

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Check out upcoming events in the table below!\n\n\n\n\n\n\n \n \n \n Order By\n Default\n \n Date - Oldest\n \n \n Date - Newest\n \n \n Title\n \n \n Author\n \n \n \n \n \n \n \n\n\n\n\n\n\n\n\nDate\n\n\nTitle\n\n\nAuthor\n\n\nCategories\n\n\n\n\n\n\n\n\n\nFeb 9, 2024\n\n\nCourse support at SDU\n\n\nJacob Fredegaard Hansen\n\n\nproteomics,SDU,course\n\n\n\n\n\n\n\nFeb 1, 2024\n\n\nDDSA PhD meetup and D3A conference\n\n\nJennifer Bartell\n\n\nconference,DDSA\n\n\n\n\n\n\n\nJan 31, 2024\n\n\nA primer for Synthetic health data\n\n\nJennifer Bartell\n\n\nmanuscript,synthetic-data,KU,AAU\n\n\n\n\n\n\n\nDec 12, 2023\n\n\nNNF Collaborative Data Science award news: the SE3D project!\n\n\nJennifer Bartell\n\n\nnovo-nordisk-foundation,grant,AAU,KU\n\n\n\n\n\n\n\nNov 9, 2023\n\n\nUpdates from SDU\n\n\nJacob Fredegaard Hansen\n\n\nproteomics,course,SDU\n\n\n\n\n\n\n\nNov 7, 2023\n\n\nA course on RDS for NGS data\n\n\nJose AR Herrera\n\n\ncourse,data-management,DTU\n\n\n\n\n\n\n\nNov 7, 2023\n\n\nFrom Data Chaos to Data Harmony\n\n\nJennifer Bartell\n\n\nconference,data-management,talk\n\n\n\n\n\n\n\nSep 7, 2023\n\n\n‘Digging into the Health Data Science Sandbox’ workshop\n\n\nJennifer Bartell\n\n\nworkshop,conference,AU\n\n\n\n\n\n\n\nAug 29, 2023\n\n\nSandbox workshop in Aarhus\n\n\nSamuele Soraggi\n\n\nworkshop,AU\n\n\n\n\n\n\n\nJun 19, 2023\n\n\nWorkshop on bulkRNA-seq data\n\n\nJennifer Bartell\n\n\nworkshop,KU,HeaDS,reNEW,transcriptomics\n\n\n\n\n\n\n\nMay 31, 2023\n\n\nSandbox App updates on UCloud rolled out\n\n\nJennifer Bartell\n\n\ngenomics,transcriptomics,proteomics,ucloud,KU,HeaDS,reNEW,transcriptomics\n\n\n\n\n\n\n\nJan 18, 2023\n\n\nSecond bulk RNA-seq course at the University of Copenhagen\n\n\nJennifer Bartell\n\n\nworkshop,course,KU,nextflow\n\n\n\n\n\n\n\nJan 10, 2023\n\n\nSandbox support for Spring 2023 courses\n\n\nJennifer Bartell\n\n\ncourses,population-genomics,personalized-medicine,single-cell,HeaDS,reNEW,transcriptomics\n\n\n\n\n\n\n\nJan 8, 2023\n\n\nSoft launch of the new Course Platform at Computerome\n\n\nJesper R Christiansen\n\n\ncomputerome\n\n\n\n\n\n\n\nNov 30, 2022\n\n\nSandbox support for ‘Advanced Statistical Learning’\n\n\nSamuele Soraggi\n\n\nAU,statistics,ML\n\n\n\n\n\n\n\nNov 15, 2022\n\n\nSandbox support within ‘Workshops in Applied Bioinformatics’ at SDU\n\n\nJacob Fredegaard Hansen\n\n\nbioinformatics,SDU\n\n\n\n\n\n\n\nNov 15, 2022\n\n\nTranscriptomics Sandbox app launched on UCloud!\n\n\nJose AR Herrera\n\n\ntranscriptomics,ucloud\n\n\n\n\n\n\n\nSep 6, 2022\n\n\nGenomics Sandbox app launched on UCloud!\n\n\nSamuele Soraggi\n\n\ngenomics,ucloud\n\n\n\n\n\n\n\nAug 18, 2022\n\n\nBulk RNA-seq course at University of Copenhagen\n\n\nJennuifer Bartell\n\n\ntranscriptomics,course,KU,HeaDS,reNEW\n\n\n\n\n\n\n\nJun 1, 2022\n\n\nBasics of Personalized Medicine - MSc course\n\n\nJennifer Bartell\n\n\npersonalized-medicine,AAU\n\n\n\n\n\n\n\nJun 1, 2022\n\n\nBasics of Personalized Medicine - final wrap-up\n\n\nJennifer Bartell\n\n\npersonalized-medicine,AAU\n\n\n\n\n\n\n\nJun 1, 2022\n\n\nGenomics course at Aarhus University\n\n\nSamuele Soraggi\n\n\ngenomics,AU\n\n\n\n\n\n\nNo matching items" + "text": "Sandbox data scientists routinely lead or contribute to courses and workshops at host universities in Denmark. 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