Updated PyPi, ReadTheDocs, and Travis CI badges

Updated badges, fixed all parts that said "mshavlik; lperezmo" and replaced for "lperezmo"

.travis.yml

@@ -20,10 +20,10 @@ script: tox
 deploy:
   provider: pypi
   distributions: sdist bdist_wheel
-  user: mshavlik; lperezmo
+  user: lperezmo
   password:
-    secure: PLEASE_REPLACE_ME
+    secure: this_is_not_used
   on:
     tags: true
-    repo: mshavlik; lperezmo/flowsym
+    repo: lperezmo/flowsym
     python: 3.8

AUTHORS.rst

@@ -5,9 +5,10 @@ Credits
 Development Lead
 ----------------
 
-* Michael M. Shavlik; Luis Perez Morales <mshavlik@uoregon.edu; lperezmo@uoregon.edu>
+* Luis Perez Morales; <lperezmo@uoregon.edu>
+* Michael M. Shavlik; <mshavlik@uoregon.edu>
 
 Contributors
 ------------
 
-None yet. Why not be the first?
+* Michael J. Harms; <harms@uoregon.edu>

README.rst

@@ -3,34 +3,29 @@ flowsym
 =======
 
 
-.. image:: https://img.shields.io/pypi/v/flowsym.svg
-        :target: https://pypi.python.org/pypi/flowsym
+.. image:: https://badge.fury.io/py/flowsym.svg
+    :target: https://badge.fury.io/py/flowsym
 
-.. image:: https://img.shields.io/travis/mshavlik; lperezmo/flowsym.svg
-        :target: https://travis-ci.com/mshavlik; lperezmo/flowsym
+.. image:: https://travis-ci.com/harmslab/flowsym.svg?branch=master
+    :target: https://travis-ci.com/harmslab/flowsym
 
 .. image:: https://readthedocs.org/projects/flowsym/badge/?version=latest
-        :target: https://flowsym.readthedocs.io/en/latest/?badge=latest
-        :alt: Documentation Status
+    :target: https://flowsym.readthedocs.io/en/latest/?badge=latest
+    :alt: Documentation Status
 
 
-.. image:: https://pyup.io/repos/github/mshavlik; lperezmo/flowsym/shield.svg
-     :target: https://pyup.io/repos/github/mshavlik; lperezmo/flowsym/
-     :alt: Updates
 
-
-
-A Python API for simulating flow cytometry data
+**A Python API for simulating flow cytometry data.**
 
 
 * Free software: MIT license
-* Documentation: https://flowsym.readthedocs.io.
+* Documentation: https://flowsym.readthedocs.io/
 
 
 Features
 --------
 
-* TODO
+
 
 Credits
 -------

flowsym/__init__.py

@@ -3,3 +3,9 @@
 __author__ = """Michael M. Shavlik; Luis Perez Morales"""
 __email__ = 'mshavlik@uoregon.edu; lperezmo@uoregon.edu'
 __version__ = '0.1.0'
+
+# Import the main module in this package
+from flowsym.flowsym import *
+
+# from . import __version__
+

flowsym/cli.py

@@ -6,10 +6,34 @@
 @click.command()
 def main(args=None):
     """Console script for flowsym."""
-    click.echo("Replace this message by putting your code into "
-               "flowsym.cli.main")
-    click.echo("See click documentation at https://click.palletsprojects.com/")
+    click.echo("Welcome to FlowSym, a Python API used to simulate flow "
+               "cytometry data!"
+               "\n\n"
+               "If you don't see any warning messages above then you're "
+               "all set!")
+    click.echo("See documentation at ")
     return 0
+# Check to see if fcsy and hdbscan are installed on machine
+import importlib.util
+
+package_name = 'fcsy'
+spec = importlib.util.find_spec(package_name)
+if spec is None:
+    print(
+        f"{package_name} is not installed, please install {package_name} to write fcs files in the \'measure\' function!")
+
+package2_name = 'hdbscan'
+spec2 = importlib.util.find_spec(package2_name)
+if spec2 is None:
+    print(
+        f"{package2_name} is not installed, please install {package2_name} to cluster data in the \'cluster\' function!")
+
+package3_name = 'unidip'
+spec3 = importlib.util.find_spec(package3_name)
+if spec3 is None:
+    print(
+        f"{package3_name} is not installed, please install {package3_name} to perform a dip test in the \'dip_test\' "
+        f"function!")
 
 
 if __name__ == "__main__":