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Commits on Apr 17, 2017

• compilation for official cnvnator

  cc2qe

  committedApr 17, 2017
  798e92f

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• use official cnvnator

  cc2qe

  committedApr 17, 2017
  176e463

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Commits on Mar 11, 2017

• use samtools in config and for cnvnator_wrapper

  ernfrid

  committedMar 11, 2017
  03267b8

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Commits on Mar 7, 2017

• add hexdump to autogenerated config

  ernfrid

  committedMar 7, 2017
  905ccf9

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• separate wrappers from cnvnator in makefile

  ernfrid

  committedMar 7, 2017
  1854e02

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Commits on Mar 14, 2015

• make

  cc2qe

  committedMar 14, 2015
  44e5d68

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• remove svtools submodule

  cc2qe

  committedMar 14, 2015
  a22ea54

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• fix issue #20 #20

  cc2qe

  committedMar 14, 2015
  00980c3

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Commits on Mar 13, 2015

• get rid of new lines

  cc2qe

  committedMar 13, 2015
  dc4bd41

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• update make

  cc2qe

  committedMar 13, 2015
  bb2e06f

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• update parallel

  cc2qe

  committedMar 13, 2015
  bf2a08c

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• update make file and remove bedtools prereq

  cc2qe

  committedMar 13, 2015
  737d125

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Commits on Feb 15, 2015

• functional integration of lumpy express

  cc2qe

  committedFeb 15, 2015
  23a887c

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Commits on Feb 14, 2015

• switch to bamkit

  cc2qe

  committedFeb 14, 2015
  9a0b7f3

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Commits on Jan 18, 2015

• This commit is primary of a revert of commit: 32cd457 , which marked duplicates on all libraries as one. This new commit aligns and marks duplicates on each library separately. it is also more robu…

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  cc2qe

  committedJan 18, 2015
  b2f19e1

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Commits on Jan 10, 2015

• sambamba now packaged in speedseq, and can be installed with 'make'

  cc2qe

  committedJan 10, 2015
  df35579

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• cleaned up Makefile

  cc2qe

  committedJan 10, 2015
  ada660d

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Commits on Jan 6, 2015

• Improvements to multi library handling of SpeedSeq SV

  cc2qe

  committedJan 6, 2015
  79a5fab

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Commits on Dec 15, 2014

• lumpy express features to call SVs on BWA MEM aligned BAM without pre-extracting splitters and discordants

  cc2qe

  committedDec 15, 2014
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Commits on Dec 8, 2014

• Improve speedseq sv output. now writes *.lumpy (raw lumpy out), *.bedpe (parsable bedpe output) and *.vcf.gz

  cc2qe

  committedDec 8, 2014
  be52b45

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Commits on Sep 15, 2014

• updated makefile

  cc2qe

  committedSep 15, 2014
  8f2dbae

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Commits on Aug 22, 2014

• moved bwa to speedseq repo

  cc2qe

  committedAug 22, 2014
  a9f2b9d

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Commits on Aug 19, 2014

• Makefile now checks for ROOT and only installs CNVNator if it detects it

  cc2qe

  committedAug 19, 2014
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Commits on Aug 18, 2014

• added read-depth annotation to speedseq sv (cnvnator now does 1kb bins as well)

  cc2qe

  committedAug 18, 2014
  2d4160a

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• updated readme, also dont make cnvnator-multi automatically

  cc2qe

  committedAug 18, 2014
  9da4362

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Commits on Aug 17, 2014

• cnvnator is now cnvnator-multi, updated config

  

  EC2 Default User

  committedAug 17, 2014
  d84efb3

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• keep going if CNVnator fails to compile

  

  EC2 Default User

  committedAug 17, 2014
  36e769e

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• better installation

  

  EC2 Default User

  committedAug 17, 2014
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