keep going if CNVnator fails to compile

hall-lab · Aug 17, 2014 · 36e769e · 36e769e
1 parent dcf9c5d
commit 36e769e
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Makefile b/Makefile
@@ -12,7 +12,7 @@ TABIX_DIR=$(SRC)/tabix
 VAWK_DIR=$(SRC)/vawk
 SVTOOLS_DIR=$(SRC)/svtools
 
-all:	samblaster freebayes lumpy svtyper cnvnator tabix vawk svtools
+all:	samblaster freebayes lumpy svtyper tabix vawk svtools cnvnator
 
 samblaster:
 	$(MAKE) -C $(SAMBLASTER_DIR)

diff --git a/speedseq_setup.py b/speedseq_setup.py
@@ -141,7 +141,7 @@ def get_update(self):
 				needInput = True
 
 def make():
-	subprocess.call('make all', shell=True)
+	subprocess.call('make -k all', shell=True)
 
 def which(prgm):
 	for path in os.environ["PATH"].split(":"):