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…passes with 1 NOTE.
guhjy · Oct 8, 2017 · 3270ff8 · 3270ff8
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: mashr
 Type: Package
 Encoding: UTF-8
 Title: Multivariate Adaptive Shrinkage 
-Version: 0.2-1
+Version: 0.2-2
 Date: 2017-10-07
 Author: Matthew Stephens, Sarah Urbut, Gao Wang, Peter Carbonetto
 Maintainer: Matthew Stephens <mstephens@uchicago.edu>
@@ -30,7 +30,9 @@ Suggests:
     ExtremeDeconvolution (>= 1.3),
     REBayes,
     testthat,
+    knitr,
     profmem
+VignetteBuilder: knitr
 NeedsCompilation: yes
 RoxygenNote: 6.0.1
 Remotes: stephens999/ashr
diff --git a/docs/intro_mash.html b/docs/intro_mash.html
diff --git a/vignettes/intro_mash.Rmd b/vignettes/intro_mash.Rmd
@@ -1,8 +1,12 @@
 ---
 title: "Introduction to mashr"
 author: "Matthew Stephens"
-date: "May 26, 2017"
-output: html_document
+date: "`r Sys.Date()`"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{mashr intro}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
 ---
 
 ```{r setup, include=FALSE}

diff --git a/vignettes/intro_mash_dd.Rmd b/vignettes/intro_mash_dd.Rmd
@@ -1,8 +1,12 @@
 ---
-title:  "Introduction to mash: data-driven covariances"
+title: "Introduction to mash: data-driven covariances"
 author: "Matthew Stephens"
-date:   "May 30, 2017"
-output: html_document
+date: "`r Sys.Date()`"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{mashr intro with data-driven covariances}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
 ---
 
 ```{r setup, include=FALSE}

diff --git a/vignettes/simulate_noncanon.Rmd b/vignettes/simulate_noncanon.Rmd
@@ -1,8 +1,12 @@
 ---
 title: "Simulation with non-canonical matrices"
 author: "Matthew Stephens"
-date: "May 26, 2017"
-output: html_document
+date: "`r Sys.Date()`"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{mashr simulation with non-canonical matrices}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
 ---
 
 ```{r setup, include=FALSE}