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@gtDMMB

gtDMMB

Georgia Tech research group in Discrete Mathematics and Molecular Biology directed by Prof. Christine Heitsch.

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  1. RNAStructViz RNAStructViz Public

    Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI

    C 17 5

  2. RNAStructProfiling RNAStructProfiling Public

    Profiles RNA structures and produces a summary graph in graphviz format. Additional information available at

    C++ 8 5

  3. pmfe pmfe Public

    Forked from AMS-MRC-disc-math-bio/pmfe

    Generate the branching polytope for a specified RNA sequence

    C++ 1

  4. GTFoldPython GTFoldPython Public template

    Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.

    C 1

  5. RNAprofilingV2 RNAprofilingV2 Public

    Python 1 1

  6. ConsensusStems ConsensusStems Public

    Scripts implementing ConsensusStems, a novel method that clusters profiles of Boltzmann sampels to predict consensus stems for unaligned sequences

    Perl

Repositories

Showing 10 of 13 repositories
  • Datasets Public
    0 0 0 0 Updated Nov 19, 2024
  • pmfe2023 Public Forked from AMS-MRC-disc-math-bio/pmfe

    Generate the branching polytope for a specified RNA sequence

    C++ 0 2 2 0 Updated Oct 9, 2024
  • pmfe Public Forked from AMS-MRC-disc-math-bio/pmfe

    Generate the branching polytope for a specified RNA sequence

    C++ 1 2 13 2 Updated Sep 12, 2023
  • RNAprofilingV2 Public
    Python 1 GPL-2.0 1 0 0 Updated Mar 19, 2023
  • GTFoldPython Public template

    Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.

    C 1 GPL-3.0 0 5 0 Updated Jun 21, 2022
  • homebrew-core Public Forked from maxieds/homebrew-core

    🍻 Taps of requirements for gtDMMB software on Mac OSX

    Ruby 0 BSD-2-Clause 13,063 0 0 Updated Jun 2, 2022
  • RNAStructViz Public

    Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI

    C 17 GPL-3.0 5 6 0 Updated Jun 2, 2022
  • gtfold Public Forked from gtfold/gtfold

    GTfold is a fast, scalable multicore code for predicting RNA secondary structure and is one to two orders of magnitude faster than the de facto standard programs and achieves comparable accuracy of prediction.

    C++ 0 18 9 0 Updated Oct 6, 2021
  • ipam-wbio-scripts Public

    Repository with scripts for 2019 IPAM Women in Biology workshop project in RNA ensemble analysis

    Python 0 BSD-3-Clause 0 0 0 Updated Jan 22, 2021
  • RNAStructProfiling_with_Consolidation_DEPRECATED Public archive
    C 0 0 0 0 Updated Nov 6, 2019
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