diff --git a/.github/workflows/build_python.yaml b/.github/workflows/build_python.yaml index c3ea535..eb2c4b7 100644 --- a/.github/workflows/build_python.yaml +++ b/.github/workflows/build_python.yaml @@ -1,43 +1,62 @@ -# Workflow to build the parallelproj C/CUDA libs (incl. installation of CUDA) -name: python build +name: Build and Test on: push: - branches: [ "master" ] + branches: + - master pull_request: - branches: [ "master" ] jobs: - Testing: - runs-on: ${{ matrix.os }} + build-and-test: + runs-on: ubuntu-latest strategy: matrix: - python-version: ['3.9','3.10'] - os: [ubuntu-latest] - + python-version: [3.9, 3.11] + tensorflow-version: [2.13, 2.15] + steps: - - uses: actions/checkout@v4 + # Checkout the repository + - name: Checkout code + uses: actions/checkout@v3 with: - fetch-depth: 0 # default 1 is, which doesnt allow to get all tags which we need for version from scm - fetch-tags: true - - name: Set up PDM - uses: pdm-project/setup-pdm@v4 + fetch-depth: 0 # Fetch all history to ensure tags are available + + # Set up Python + - name: Set up Python + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - - name: Show package version + # Install dependencies + - name: Install dependencies run: | - git describe --tags - pdm show --version - - name: Install dependencies and package + python -m pip install --upgrade pip + pip install build + + # Build the package + - name: Build the package run: | - pdm update -d -G test - pdm list - - name: Test CLI + python -m build + + # Install tensorflow + - name: Install tensorflow run: | - pdm run pyapetnet_list_models - pdm run pyapetnet_predict_from_nifti -h - pdm run pyapetnet_predict_from_dicom -h - - name: Run Tests + pip install tensorflow==${{ matrix.tensorflow-version }} + + # Install the package + - name: Install the package + run: | + pip install dist/*.whl + + # Run tests + - name: Run tests + run: | + pip install pytest + pytest -vv tests + + # Test entry points + - name: Test entry points run: | - pdm run tox + pyapetnet_list_models + pyapetnet_predict_from_nifti -h + pyapetnet_predict_from_dicom -h diff --git a/.github/workflows/publish-to-pypi.yaml b/.github/workflows/publish-to-pypi.yaml new file mode 100644 index 0000000..5ff1cc1 --- /dev/null +++ b/.github/workflows/publish-to-pypi.yaml @@ -0,0 +1,41 @@ +name: Publish Python distributions to PyPI + +on: + push: + tags: + - "v[0-9]+" + - "v[0-9]+.[0-9]+" + - "v[0-9]+.[0-9]+.[0-9]+" + - "v[0-9]+[a-z][0-9]+" + - "v[0-9]+.[0-9]+[a-z][0-9]+" + - "v[0-9]+.[0-9]+.[0-9]+[a-z][0-9]+" + +jobs: + build-n-publish: + name: Build and publish Python distributions package to PyPI + runs-on: ubuntu-latest + + permissions: + id-token: write + contents: read + + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 # Fetch all history to ensure tags are available + - name: Set up Python 3.11 + uses: actions/setup-python@v4 + with: + python-version: "3.11" + + - name: Install pypa/build + run: | + python -m pip install build --user + - name: Build a binary wheel and a source tarball + run: | + python -m build --sdist --wheel --outdir dist/ . + + - name: Publish distribution package to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + password: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.github/workflows/publish_pypi.yaml b/.github/workflows/publish_pypi.yaml deleted file mode 100644 index 75a98b2..0000000 --- a/.github/workflows/publish_pypi.yaml +++ /dev/null @@ -1,34 +0,0 @@ -name: pypi publish - 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"tensorflow~=2.13", - "keras~=2.0", + "tensorflow<=2.15", ] classifiers = [ "License :: OSI Approved :: MIT License", @@ -29,21 +32,10 @@ pyapetnet_predict_from_nifti = "pyapetnet.scripts.predict_from_nifti:predict_fro [project.urls] Homepage = "https://github.com/gschramm/pyapetnet" -[build-system] -requires = ["pdm-backend"] -build-backend = "pdm.backend" -[tool.pdm] -distribution = true - -[tool.pdm.dev-dependencies] -test = [ - "pytest>=8.0.1", - "tox>=4.13.0", - "tox-pdm>=0.7.2", -] +[tool.setuptools.packages.find] +where = ["src"] -[tool.pdm.version] -source = "scm" -write_to = "pyapetnet/_version.py" -write_template = "__version__ = '{}'" \ No newline at end of file +[tool.setuptools_scm] +version_scheme = "post-release" +local_scheme = "dirty-tag" \ No newline at end of file diff --git a/src/pyapetnet/__init__.py b/src/pyapetnet/__init__.py index 8dee4bf..f4f77ed 100644 --- a/src/pyapetnet/__init__.py +++ b/src/pyapetnet/__init__.py @@ -1 +1,6 @@ -from ._version import __version__ +from importlib.metadata import version, PackageNotFoundError + +try: + __version__ = version("pyapetnet") +except PackageNotFoundError: + __version__ = "unknown" diff --git a/src/pyapetnet/_version.py b/src/pyapetnet/_version.py deleted file mode 100644 index c36cab7..0000000 --- a/src/pyapetnet/_version.py +++ /dev/null @@ -1 +0,0 @@ -__version__ == "0.0.0" diff --git a/tests/test_version.py b/tests/test_version.py index 33d0c90..3a133db 100644 --- a/tests/test_version.py +++ b/tests/test_version.py @@ -1,7 +1,7 @@ from __future__ import annotations -import pyapetnet._version +import pyapetnet def test_version() -> None: - print(pyapetnet._version.__version__) + print(pyapetnet.__version__) diff --git a/tox.ini b/tox.ini deleted file mode 100644 index 635b3a1..0000000 --- a/tox.ini +++ /dev/null @@ -1,10 +0,0 @@ -[tox] -env_list = py39-tf213, py310-tf215 - -[testenv] -groups = dev -deps = - py39-tf213: tensorflow>=2.13,<2.14 - py310-tf215: tensorflow~=2.15 -commands = - pytest tests