add pyproject.toml (#14)

* add pyproject.toml

* change GHA

* change GHA

* change GHA

* change GHA

* change GHA

* change GHA

* change GHA

* change GHA

* rename gh action file

* rename II

.github/workflows/build_python.yaml

@@ -0,0 +1,37 @@
+# Workflow to build the parallelproj C/CUDA libs (incl. installation of CUDA)
+name: python build
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ['3.8', '3.9', '3.10', '3.11']
+
+    runs-on: ${{ matrix.os }}
+    env:
+      MPLBACKEND: Agg  # https://github.com/orgs/community/discussions/26434
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install package
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+      
+    - name: Run nifti prediction
+      run: |
+        cd demo_data
+        pyapetnet_predict_from_nifti brainweb_06_osem_cropped.nii brainweb_06_t1_cropped.nii S2_osem_b10_fdg_pe2i --no_coreg

pyapetnet/.gitignore

@@ -0,0 +1 @@
+_version.py

pyproject.toml

@@ -0,0 +1,44 @@
+[build-system]
+requires = ["hatchling",
+"hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
+name = "pyapetnet"
+dynamic = ["version"]
+description = "a CNN for anatomy-guided deconvolution and denoising of PET images"
+readme = "README.md"
+license = "MIT"
+requires-python = ">=3.8"
+authors = [
+    { name = "Georg Schramm", email = "georg.schramm@kuleuven.be" },
+]
+classifiers = [
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3",
+]
+dependencies = [
+    "pymirc>=0.29",
+    "SimpleITK>=2.0",
+    "tensorflow>=2.2",
+]
+
+[project.scripts]
+pyapetnet_list_models = "pyapetnet.list_models:main"
+pyapetnet_predict_from_dicom = "pyapetnet.predict_from_dicom:main"
+pyapetnet_predict_from_nifti = "pyapetnet.predict_from_nifti:main"
+
+[project.urls]
+Homepage = "https://github.com/gschramm/pyapetnet"
+
+[tool.hatch.version]
+source = "vcs"
+
+[tool.hatch.build.hooks.vcs]
+version-file = "pyapetnet/_version.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/pyapetnet",
+]