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Merge branch 'dev' of github.com:grunwaldlab/pathogensurveillance int… nf-core CI #149: Commit 648ac28 pushed by zachary-foster
February 22, 2025 16:42 3s dev
dev
February 22, 2025 16:42 3s
clean-up old test data sheet nf-core CI #148: Commit c4f5b4f pushed by masudermann
February 21, 2025 23:48 3s dev
dev
February 21, 2025 23:48 3s
fix samplesheet_check bug nf-core CI #147: Commit 3ad0538 pushed by zachary-foster
February 20, 2025 23:23 3s dev
dev
February 20, 2025 23:23 3s
lot of small updates nf-core CI #146: Commit 49fce4f pushed by zachary-foster
February 20, 2025 21:04 4s dev
dev
February 20, 2025 21:04 4s
update presentation nf-core CI #145: Commit 5404171 pushed by zachary-foster
February 20, 2025 09:51 4s dev
dev
February 20, 2025 09:51 4s
speed up VCF_TO_SNP_ALIGN nf-core CI #144: Commit d1f0153 pushed by zachary-foster
February 19, 2025 19:27 4s dev
dev
February 19, 2025 19:27 4s
fix bug nf-core CI #143: Commit 054342b pushed by zachary-foster
February 18, 2025 00:54 3s dev
dev
February 18, 2025 00:54 3s
disable problematic samples in serratia dataset nf-core CI #142: Commit 1f368ba pushed by zachary-foster
February 17, 2025 22:49 3s dev
dev
February 17, 2025 22:49 3s
apply optmizations to subset_core_gene.R to subset_busco_gene.R nf-core CI #141: Commit 6f84e3f pushed by zachary-foster
February 17, 2025 21:52 3s dev
dev
February 17, 2025 21:52 3s
Merge branch 'dev' of github.com:grunwaldlab/pathogensurveillance int… nf-core CI #140: Commit 31b4c51 pushed by zachary-foster
February 17, 2025 18:23 4s dev
dev
February 17, 2025 18:23 4s
Make subset core gene much faster nf-core CI #139: Commit 88b1a35 pushed by zachary-foster
February 17, 2025 00:49 3s dev
dev
February 17, 2025 00:49 3s
change metacoder source to CRAN nf-core CI #138: Commit a9af202 pushed by zachary-foster
February 12, 2025 18:39 4s dev
dev
February 12, 2025 18:39 4s
increase SUBSET_CORE_GENES run time to 24h nf-core CI #137: Commit e168166 pushed by zachary-foster
February 12, 2025 01:48 3s dev
dev
February 12, 2025 01:48 3s
added pualbication draft nf-core CI #136: Commit b2668cf pushed by zachary-foster
February 11, 2025 20:19 4s dev
dev
February 11, 2025 20:19 4s
fix bug in psminer nf-core CI #135: Commit 87c47db pushed by zachary-foster
February 11, 2025 19:23 3s dev
dev
February 11, 2025 19:23 3s
update psminer version used for csv->tsv conversion nf-core CI #134: Commit 3505e44 pushed by zachary-foster
February 11, 2025 19:16 3s dev
dev
February 11, 2025 19:16 3s
fix input name collision nf-core CI #133: Commit 850e8dd pushed by zachary-foster
February 11, 2025 19:01 4s dev
dev
February 11, 2025 19:01 4s
add missed csv->tsv change nf-core CI #132: Commit fa6e237 pushed by zachary-foster
February 11, 2025 18:39 5s dev
dev
February 11, 2025 18:39 5s
use TSVs instead of CSVs and let user use both nf-core CI #131: Commit 0eae578 pushed by zachary-foster
February 11, 2025 18:05 4s dev
dev
February 11, 2025 18:05 4s
use docker container for singularity for TRIM_AND_SKETCH nf-core CI #130: Commit d0b18a1 pushed by zachary-foster
February 10, 2025 17:25 4s dev
dev
February 10, 2025 17:25 4s
fix linting error nf-core CI #129: Commit 51f7422 pushed by zachary-foster
February 7, 2025 23:58 3s dev
dev
February 7, 2025 23:58 3s
Merge branch 'dev' of github.com:grunwaldlab/pathogensurveillance int… nf-core CI #128: Commit 8da208a pushed by zachary-foster
February 7, 2025 23:55 3s dev
dev
February 7, 2025 23:55 3s
Merge branch 'dev' of github.com:grunwaldlab/pathogensurveillance int… nf-core CI #127: Commit b65c7f7 pushed by grunwald
February 7, 2025 16:18 3s dev
dev
February 7, 2025 16:18 3s
changes to samplesheet check to better support all the oddness in the… nf-core CI #126: Commit 8f9963c pushed by zachary-foster
February 7, 2025 03:45 3s dev
dev
February 7, 2025 03:45 3s
set gatk_variantfiltration ram nf-core CI #125: Commit ec8f8d8 pushed by zachary-foster
February 6, 2025 18:35 4s dev
dev
February 6, 2025 18:35 4s