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Parallelized processes #34

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AbrehamT opened this issue Apr 4, 2025 · 1 comment
Open

Parallelized processes #34

AbrehamT opened this issue Apr 4, 2025 · 1 comment

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@AbrehamT
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AbrehamT commented Apr 4, 2025

Hello,

Thank you for making this repository. It's been of great help in our research.
I was wondering if their was a version of the scripts in this repo that have been optimized for parallel processing? I'm asking because I am attempting to parallelize the pubtator to xml conversion process and I thought having that open would be a good idea.

Please let me know and I can submit a pull request when I'm done.

@falquaddoomi
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Hi @AbrehamT, thanks for your interest in improving PubTator! Just FYI, I'm co-maintaining this repo with the other repo owners. To answer your question, I'm unaware of any scripts that implement parallelization in the XML conversion process.

If you submit a PR, I'd be happy to review it. Thanks again!

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