devcontainer.json

{
    "name": "nfcore",
    "image": "nfcore/gitpod:latest",
    "remoteUser": "gitpod",

    // Configure tool-specific properties.
    "customizations": {
        // Configure properties specific to VS Code.
        "vscode": {
            // Set *default* container specific settings.json values on container create.
            "settings": {
                "python.defaultInterpreterPath": "/opt/conda/bin/python",
                "python.linting.enabled": true,
                "python.linting.pylintEnabled": true,
                "python.formatting.autopep8Path": "/opt/conda/bin/autopep8",
                "python.formatting.yapfPath": "/opt/conda/bin/yapf",
                "python.linting.flake8Path": "/opt/conda/bin/flake8",
                "python.linting.pycodestylePath": "/opt/conda/bin/pycodestyle",
                "python.linting.pydocstylePath": "/opt/conda/bin/pydocstyle",
                "python.linting.pylintPath": "/opt/conda/bin/pylint"
            },

            // Add the IDs of extensions you want installed when the container is created.
            "extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"]
        }
    }
}