Skip to content

Releases: gluc/data.tree

v1.1.0

12 Nov 11:18
08b7dbb
Compare
Choose a tag to compare

Version 1.1.0

  • IMPROVE: Node names may no longer be NA. It was not fully supported, and now it is an error. (#152)
  • FIX: changed lock_object to lock_objects (#149 thx to Olly Beagly)
  • FIX: help('data.tree') works again
  • IMPROVE: FromListSimple and as.Node.list now have an additional parameter 'interpretNullAsList'. See #169 for details.
  • IMPROVE: added parameter row.names = FALSEin print.Node() to hide row numbers when printing a data.tree.

Version 1.0.0

31 Jul 08:00
Compare
Choose a tag to compare

Version 1.0.0

  • IMPROVE: Replaced dependency on stringr by dependency on stringi, which make data.tree even more light-weight
  • CHANGE: Node serialization changed. In many cases, you might still be able to load previously saved data.tree objects, but then they do not correspond to the latest version.
  • CHANGE: New reserved words for Node: attributes and attributesAll
  • NOTE: Node$fields and Node$fieldsAll will be deprecated in the next version. Use Node$attributes and Node$attributesAll instead
  • REMOVE: Deprecated Node$FindNode has been removed (use FindeNode(node, ...) instead)
  • IMPROVE: Node is now fully documented, (thx to roxygen2 for supporting R6)
  • CHANGE: data.tree now depends on R 3.5
  • FIX: adjusted sample data that didn't support correct handling of active bindings
  • IMPROVE: Adding reserved word check to FromDataFrameNetwork (#147 thx to wkumler)

0.7.11

09 Nov 08:16
Compare
Choose a tag to compare

Version 0.7.11

  • IMPROVE: diagrammeR is now only suggested, so data.tree is much more lightweight if plotting is not needed (#143 thx to Russ Hyde)
  • FIX: plot now also works with quotations in names (#137 thx to thotal)
  • IMPROVE: as.list and other conversions to list now contain pruneFun argument (#142)

0.7.10

10 Oct 20:15
Compare
Choose a tag to compare

various spell checks

0.7.9

10 Oct 19:14
Compare
Choose a tag to compare
  • FIX: Bug in as.data.frame.Node: NA for certain lists slots (#135)
  • FIX: Get prints Null as NA by default (#128)

Version 0.7.8

24 Sep 14:42
Compare
Choose a tag to compare

Fix issue with s3 / ape

Version 0.7.7

23 Sep 13:33
Compare
Choose a tag to compare
Version 0.7.7 Pre-release
Pre-release
  • IMPROVE: if an attribute of a node has n dimensions, then Get will return an array of dim n+1, with the names of the first dimension being equal to the node names (thanks to Chris Hammil)
  • FIX: fieldsAll now doesn't simplify (thanks to Vaclav Slimacek)
  • FIX: fix CRAN errors related to S3 generics /export

0.7.6 (CRAN)

16 Jun 15:46
Compare
Choose a tag to compare
  • IMPROVE: plot now also works for trees with a single root node (thx to Pierre Neuvial)
  • IMPROVE: ellipsis parameters are not passed to DiagrammeR for plotting (#109)
  • FIX: Dependency on DiagrammeR (>= 1.0.0) explicitly stated (#111)
  • IMPROVE: Allow tibble in FromDataFrameNetwork and FromDataFrameTable (#115)

0.7.5

06 Mar 21:01
Compare
Choose a tag to compare

Version 0.7.5

  • IMPROVE: namesNotUnique parameter in as.Node.phylo (#106)
  • FIX: fixed incompatibility issue with DiagrammeR (#110)

0.7.3 (CRAN)

12 Sep 03:13
Compare
Choose a tag to compare

Version 0.7.3

  • FIX: Various typos in documentation