From aa655e969233ab85242750a14e3a1c8ac38b4ae4 Mon Sep 17 00:00:00 2001
From: Lehotzky <dlehotzk@broadinstitute.org>
Date: Thu, 17 Oct 2024 16:26:45 -0400
Subject: [PATCH] account for cases when no indels are within maf

---
 assemble_interval_sets.ipynb     | 5142 ------------------------------
 generate_dig_report_coding.py    |   94 +-
 generate_dig_report_combined.py  |   65 +-
 generate_dig_report_noncoding.py |   25 +-
 run.py                           |    4 +-
 train_mutation_map.ipynb         |  187 +-
 6 files changed, 163 insertions(+), 5354 deletions(-)
 delete mode 100644 assemble_interval_sets.ipynb

diff --git a/assemble_interval_sets.ipynb b/assemble_interval_sets.ipynb
deleted file mode 100644
index 7498557..0000000
--- a/assemble_interval_sets.ipynb
+++ /dev/null
@@ -1,5142 +0,0 @@
-{
- "cells": [
-  {
-   "cell_type": "code",
-   "execution_count": 1,
-   "id": "e3dd6c6d-9bef-4b83-b1f0-6b888c8a2773",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "import pandas as pd\n",
-    "import numpy as np\n",
-    "import os\n",
-    "import gcsfs\n",
-    "from google import auth"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 2,
-   "id": "8e8bbc6e-c3be-4d3e-8d72-d3c81c16e89b",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "project_name = 'broad-getzlab-workflows'\n",
-    "credentials, _ = auth.default()\n",
-    "gcs = gcsfs.GCSFileSystem(project_name, token=credentials)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "c9285490-fff0-4448-91c8-26f0e568062c",
-   "metadata": {},
-   "source": [
-    "Used https://genome.ucsc.edu/cgi-bin/hgLiftOver to lift over from hg38 to hg19"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 3,
-   "id": "7b8b0296-d2f1-4e6a-b5ca-6ce39247bc77",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "dir_interval_lists = './dlbcl_known_enhancers/'\n",
-    "genome_reference = 'hg19'"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 4,
-   "id": "f8f5857a-de75-4226-91c4-d6893d9866e9",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "enhancer_lists = [f for f in os.listdir(dir_interval_lists) if (genome_reference in f) and ('promoter' not in f) and ('bed12' not in f)]\n",
-    "promoter_lists = [f for f in os.listdir(dir_interval_lists) if (genome_reference in f) and ('promoter' in f) and ('bed12' not in f)]"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 5,
-   "id": "fdb19876-5e71-4124-a6e5-9eddc044e312",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "['Payton_DLBCL_superenhancers.hg19.sort.bed',\n",
-       " 'LY1.hg19.bed',\n",
-       " 'Immunoglobulin_functional_elements.sort.hg19.bed',\n",
-       " 'Pan_Hammarstrom_kategis.hg19.sort.bed',\n",
-       " 'all.sample_gt15.score_gt1.hg19.bed',\n",
-       " 'Bradner_superenhancers.hg19.sort.bed',\n",
-       " 'all.sample_gt5.score_gt1.hg19.bed']"
-      ]
-     },
-     "execution_count": 5,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "enhancer_lists"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "35e4d0bb-d161-4106-b385-46f8e6f92e8f",
-   "metadata": {},
-   "source": [
-    "# Promoters"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "9ea6a04f-8571-4d32-826d-010609c2b849",
-   "metadata": {},
-   "source": [
-    "## Loading promoter tables"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 6,
-   "id": "9ab4507d-4e72-41e8-a4bf-b52bd2b6a2db",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "<div>\n",
-       "<style scoped>\n",
-       "    .dataframe tbody tr th:only-of-type {\n",
-       "        vertical-align: middle;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe tbody tr th {\n",
-       "        vertical-align: top;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe thead th {\n",
-       "        text-align: right;\n",
-       "    }\n",
-       "</style>\n",
-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>gene</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>915901</td>\n",
-       "      <td>916367</td>\n",
-       "      <td>PERM1</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>917392</td>\n",
-       "      <td>918058</td>\n",
-       "      <td>PERM1</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1690179</td>\n",
-       "      <td>1690620</td>\n",
-       "      <td>NADK</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1709555</td>\n",
-       "      <td>1710848</td>\n",
-       "      <td>NADK</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1821905</td>\n",
-       "      <td>1823065</td>\n",
-       "      <td>GNB1</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3161</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>154250890</td>\n",
-       "      <td>154251188</td>\n",
-       "      <td>F8</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3162</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>154299263</td>\n",
-       "      <td>154300012</td>\n",
-       "      <td>BRCC3,MTCP1</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3163</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>154841930</td>\n",
-       "      <td>154842809</td>\n",
-       "      <td>SPRY3</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3164</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>154996925</td>\n",
-       "      <td>154997508</td>\n",
-       "      <td>SPRY3</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3165</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>21905780</td>\n",
-       "      <td>21907500</td>\n",
-       "      <td>KDM5D</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>3166 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "     chromosome      start        end         gene\n",
-       "0          chr1     915901     916367        PERM1\n",
-       "1          chr1     917392     918058        PERM1\n",
-       "2          chr1    1690179    1690620         NADK\n",
-       "3          chr1    1709555    1710848         NADK\n",
-       "4          chr1    1821905    1823065         GNB1\n",
-       "...         ...        ...        ...          ...\n",
-       "3161       chrX  154250890  154251188           F8\n",
-       "3162       chrX  154299263  154300012  BRCC3,MTCP1\n",
-       "3163       chrX  154841930  154842809        SPRY3\n",
-       "3164       chrX  154996925  154997508        SPRY3\n",
-       "3165       chrY   21905780   21907500        KDM5D\n",
-       "\n",
-       "[3166 rows x 4 columns]"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "source": [
-    "dict_promoters = {}\n",
-    "for f in promoter_lists:\n",
-    "    df = pd.read_csv(dir_interval_lists + f, sep = '\\t', names=['chromosome', 'start', 'end', 'gene', 'drop'])\n",
-    "    df = df[df.columns[:-1]]\n",
-    "    dict_promoters[f] = df\n",
-    "    display(df)"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "e408ed8d-0f9f-4ca2-b26c-6546e229bbad",
-   "metadata": {},
-   "source": [
-    "## Checking whether genomic locations are local to chromosomes"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
-   "id": "44b29bd5-2e51-4b36-86a5-015ab642a7da",
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "chr1 915901 248524780\n",
-      "chr2 1417958 242499125\n",
-      "chr3 1134442 197687216\n",
-      "chr4 52976 187645939\n",
-      "chr5 218165 180415934\n",
-      "chr6 391044 170863573\n",
-      "chr7 766136 158497912\n",
-      "chr8 1771788 145743470\n",
-      "chr9 214569 140445635\n",
-      "chr10 735220 135342980\n",
-      "chr11 535133 134094669\n",
-      "chr12 498371 133339056\n",
-      "chr13 19755907 114239632\n",
-      "chr14 20801125 107287760\n",
-      "chr15 22892423 102030108\n",
-      "chr16 402146 89883320\n",
-      "chr17 1303378 80798526\n",
-      "chr18 2570892 76740768\n",
-      "chr19 409070 58874427\n",
-      "chr20 524292 62796131\n",
-      "chr21 14981532 47573884\n",
-      "chr22 17073819 50946816\n"
-     ]
-    }
-   ],
-   "source": [
-    "for c in sorted([int(ch[3:]) for ch in df.chromosome.unique() if ch[3:] not in ['X', 'Y']]):\n",
-    "    idx = 'chr'+str(c)\n",
-    "    print(idx, df.loc[df.chromosome==idx, 'start'].min(), df.loc[df.chromosome==idx, 'end'].max())"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "4205b834-9705-4d55-b959-ad4a82e616fe",
-   "metadata": {},
-   "source": [
-    "## Converting intervals to interval sets with [bed12 format](https://github.com/maxwellsh/DIGDriver/wiki/06:-Analyzing-new-interval-sets#defining-sets-of-intervals)"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 8,
-   "id": "e074b070-f247-41a1-956b-48a6ad1a2176",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "<div>\n",
-       "<style scoped>\n",
-       "    .dataframe tbody tr th:only-of-type {\n",
-       "        vertical-align: middle;\n",
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-       "\n",
-       "    .dataframe tbody tr th {\n",
-       "        vertical-align: top;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe thead th {\n",
-       "        text-align: right;\n",
-       "    }\n",
-       "</style>\n",
-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>915901</td>\n",
-       "      <td>918058</td>\n",
-       "      <td>hg19promoters::dlbcl::PERM1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>915901</td>\n",
-       "      <td>918058</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>466,666,</td>\n",
-       "      <td>0,1491,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1690179</td>\n",
-       "      <td>1710848</td>\n",
-       "      <td>hg19promoters::dlbcl::NADK::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1690179</td>\n",
-       "      <td>1710848</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>441,1293,</td>\n",
-       "      <td>0,19376,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1821905</td>\n",
-       "      <td>1823065</td>\n",
-       "      <td>hg19promoters::dlbcl::GNB1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1821905</td>\n",
-       "      <td>1823065</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1160,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1935120</td>\n",
-       "      <td>1935421</td>\n",
-       "      <td>hg19promoters::dlbcl::CFAP74::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1935120</td>\n",
-       "      <td>1935421</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>301,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1981486</td>\n",
-       "      <td>2036709</td>\n",
-       "      <td>hg19promoters::dlbcl::PRKCZ::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1981486</td>\n",
-       "      <td>2036709</td>\n",
-       "      <td>0</td>\n",
-       "      <td>3</td>\n",
-       "      <td>466,469,637,</td>\n",
-       "      <td>0,23456,54586,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2158629</td>\n",
-       "      <td>2160105</td>\n",
-       "      <td>hg19promoters::dlbcl::SKI::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2158629</td>\n",
-       "      <td>2160105</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1476,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2398690</td>\n",
-       "      <td>2406854</td>\n",
-       "      <td>hg19promoters::dlbcl::PLCH2::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2398690</td>\n",
-       "      <td>2406854</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>300,429,</td>\n",
-       "      <td>0,7735,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2487075</td>\n",
-       "      <td>2488155</td>\n",
-       "      <td>hg19promoters::dlbcl::TNFRSF14::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2487075</td>\n",
-       "      <td>2488155</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1080,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2985601</td>\n",
-       "      <td>2986987</td>\n",
-       "      <td>hg19promoters::dlbcl::PRDM16::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2985601</td>\n",
-       "      <td>2986987</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1386,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>1</td>\n",
-       "      <td>3568079</td>\n",
-       "      <td>3615958</td>\n",
-       "      <td>hg19promoters::dlbcl::TP73::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>3568079</td>\n",
-       "      <td>3615958</td>\n",
-       "      <td>0</td>\n",
-       "      <td>3</td>\n",
-       "      <td>1167,255,563,</td>\n",
-       "      <td>0,38954,47316,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>1</td>\n",
-       "      <td>4716291</td>\n",
-       "      <td>4716702</td>\n",
-       "      <td>hg19promoters::dlbcl::AJAP1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>4716291</td>\n",
-       "      <td>4716702</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>411,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6239826</td>\n",
-       "      <td>6241312</td>\n",
-       "      <td>hg19promoters::dlbcl::CHD5::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6239826</td>\n",
-       "      <td>6241312</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1486,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6259538</td>\n",
-       "      <td>6259942</td>\n",
-       "      <td>hg19promoters::dlbcl::RPL22::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6259538</td>\n",
-       "      <td>6259942</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>404,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6265264</td>\n",
-       "      <td>6266448</td>\n",
-       "      <td>hg19promoters::dlbcl::RNF207::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6265264</td>\n",
-       "      <td>6266448</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>332,599,</td>\n",
-       "      <td>0,585,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6844916</td>\n",
-       "      <td>7765429</td>\n",
-       "      <td>hg19promoters::dlbcl::CAMTA1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6844916</td>\n",
-       "      <td>7765429</td>\n",
-       "      <td>0</td>\n",
-       "      <td>4</td>\n",
-       "      <td>1151,301,793,1366,</td>\n",
-       "      <td>0,884655,895283,919147,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>1</td>\n",
-       "      <td>8086201</td>\n",
-       "      <td>8086639</td>\n",
-       "      <td>hg19promoters::dlbcl::ERRFI1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8086201</td>\n",
-       "      <td>8086639</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>438,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9648508</td>\n",
-       "      <td>9649354</td>\n",
-       "      <td>hg19promoters::dlbcl::TMEM201::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9648508</td>\n",
-       "      <td>9649354</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>846,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9711715</td>\n",
-       "      <td>9751464</td>\n",
-       "      <td>hg19promoters::dlbcl::PIK3CD::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9711715</td>\n",
-       "      <td>9751464</td>\n",
-       "      <td>0</td>\n",
-       "      <td>3</td>\n",
-       "      <td>725,832,311,</td>\n",
-       "      <td>0,37422,39438,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>1</td>\n",
-       "      <td>10270234</td>\n",
-       "      <td>10290992</td>\n",
-       "      <td>hg19promoters::dlbcl::KIF1B::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>10270234</td>\n",
-       "      <td>10290992</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>487,240,</td>\n",
-       "      <td>0,20518,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>1</td>\n",
-       "      <td>10856563</td>\n",
-       "      <td>10856950</td>\n",
-       "      <td>hg19promoters::dlbcl::CASZ1::NA</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>10856563</td>\n",
-       "      <td>10856950</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>387,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom     start       end                                name  score  \\\n",
-       "0      1    915901    918058     hg19promoters::dlbcl::PERM1::NA   1000   \n",
-       "1      1   1690179   1710848      hg19promoters::dlbcl::NADK::NA   1000   \n",
-       "2      1   1821905   1823065      hg19promoters::dlbcl::GNB1::NA   1000   \n",
-       "3      1   1935120   1935421    hg19promoters::dlbcl::CFAP74::NA   1000   \n",
-       "4      1   1981486   2036709     hg19promoters::dlbcl::PRKCZ::NA   1000   \n",
-       "5      1   2158629   2160105       hg19promoters::dlbcl::SKI::NA   1000   \n",
-       "6      1   2398690   2406854     hg19promoters::dlbcl::PLCH2::NA   1000   \n",
-       "7      1   2487075   2488155  hg19promoters::dlbcl::TNFRSF14::NA   1000   \n",
-       "8      1   2985601   2986987    hg19promoters::dlbcl::PRDM16::NA   1000   \n",
-       "9      1   3568079   3615958      hg19promoters::dlbcl::TP73::NA   1000   \n",
-       "10     1   4716291   4716702     hg19promoters::dlbcl::AJAP1::NA   1000   \n",
-       "11     1   6239826   6241312      hg19promoters::dlbcl::CHD5::NA   1000   \n",
-       "12     1   6259538   6259942     hg19promoters::dlbcl::RPL22::NA   1000   \n",
-       "13     1   6265264   6266448    hg19promoters::dlbcl::RNF207::NA   1000   \n",
-       "14     1   6844916   7765429    hg19promoters::dlbcl::CAMTA1::NA   1000   \n",
-       "15     1   8086201   8086639    hg19promoters::dlbcl::ERRFI1::NA   1000   \n",
-       "16     1   9648508   9649354   hg19promoters::dlbcl::TMEM201::NA   1000   \n",
-       "17     1   9711715   9751464    hg19promoters::dlbcl::PIK3CD::NA   1000   \n",
-       "18     1  10270234  10290992     hg19promoters::dlbcl::KIF1B::NA   1000   \n",
-       "19     1  10856563  10856950     hg19promoters::dlbcl::CASZ1::NA   1000   \n",
-       "\n",
-       "   strand  thickStart  thickEnd  itemRgb  blockCount          blockSizes  \\\n",
-       "0       .      915901    918058        0           2            466,666,   \n",
-       "1       .     1690179   1710848        0           2           441,1293,   \n",
-       "2       .     1821905   1823065        0           1               1160,   \n",
-       "3       .     1935120   1935421        0           1                301,   \n",
-       "4       .     1981486   2036709        0           3        466,469,637,   \n",
-       "5       .     2158629   2160105        0           1               1476,   \n",
-       "6       .     2398690   2406854        0           2            300,429,   \n",
-       "7       .     2487075   2488155        0           1               1080,   \n",
-       "8       .     2985601   2986987        0           1               1386,   \n",
-       "9       .     3568079   3615958        0           3       1167,255,563,   \n",
-       "10      .     4716291   4716702        0           1                411,   \n",
-       "11      .     6239826   6241312        0           1               1486,   \n",
-       "12      .     6259538   6259942        0           1                404,   \n",
-       "13      .     6265264   6266448        0           2            332,599,   \n",
-       "14      .     6844916   7765429        0           4  1151,301,793,1366,   \n",
-       "15      .     8086201   8086639        0           1                438,   \n",
-       "16      .     9648508   9649354        0           1                846,   \n",
-       "17      .     9711715   9751464        0           3        725,832,311,   \n",
-       "18      .    10270234  10290992        0           2            487,240,   \n",
-       "19      .    10856563  10856950        0           1                387,   \n",
-       "\n",
-       "                blockStarts  \n",
-       "0                   0,1491,  \n",
-       "1                  0,19376,  \n",
-       "2                        0,  \n",
-       "3                        0,  \n",
-       "4            0,23456,54586,  \n",
-       "5                        0,  \n",
-       "6                   0,7735,  \n",
-       "7                        0,  \n",
-       "8                        0,  \n",
-       "9            0,38954,47316,  \n",
-       "10                       0,  \n",
-       "11                       0,  \n",
-       "12                       0,  \n",
-       "13                   0,585,  \n",
-       "14  0,884655,895283,919147,  \n",
-       "15                       0,  \n",
-       "16                       0,  \n",
-       "17           0,37422,39438,  \n",
-       "18                 0,20518,  \n",
-       "19                       0,  "
-      ]
-     },
-     "execution_count": 8,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "for key in dict_promoters:\n",
-    "    df = dict_promoters[key]\n",
-    "    il_name = key.split('.bed')[0].replace('.', '_')\n",
-    "    # data frame containing genes associated with each interval\n",
-    "    df_genes = df.gene.str.split(',', expand=True)\n",
-    "    # unique list of all genes in interval list\n",
-    "    genes = []\n",
-    "    for col in df_genes.columns:\n",
-    "        genes += df_genes[col][~df_genes[col].isna()].tolist()\n",
-    "    genes = np.unique(genes)\n",
-    "    # columns of bed12 file \n",
-    "    cols_bed12 = ['chrom', 'start', 'end', 'name', 'score', 'strand', 'thickStart', 'thickEnd', 'itemRgb', 'blockCount', 'blockSizes', 'blockStarts']\n",
-    "    data = []\n",
-    "    for g in genes:\n",
-    "        dfi = df.loc[np.any(df_genes==g, axis=1)].copy().sort_values(['chromosome', 'start'], ignore_index=True)\n",
-    "        # chromosome number\n",
-    "        chrom = dfi.chromosome.unique()[0][3:]\n",
-    "        # start position of first interval in set (zero-indexed)\n",
-    "        start = dfi.start.min()\n",
-    "        # end position of final interval in set (zero-indexed)\n",
-    "        end = dfi.end.max()\n",
-    "        # unique name for this set of annotations\n",
-    "        name = '{}::dlbcl::{}::NA'.format(il_name.replace('_', ''), g)\n",
-    "        # any non-negative number (we usually use 0)\n",
-    "        score = 1000\n",
-    "        # +, -, or . if no strand\n",
-    "        strand = '.'\n",
-    "        # same as start (for Dig)\n",
-    "        thickStart = start\n",
-    "        # same as end (for Dig)\n",
-    "        thickEnd = end\n",
-    "        # ignored (we usually set to 0)\n",
-    "        itemRgb = 0\n",
-    "        # number of intervals in the set\n",
-    "        blockCount = len(dfi) \n",
-    "        # # length of each interval in the set\n",
-    "        blockSizes = ','.join((dfi.end - dfi.start).astype(str).tolist()) + ','\n",
-    "        # # start position of each interval relative to start (so the first entry is always 0)\n",
-    "        blockStarts = ','.join((dfi.start - dfi.start.min()).astype(str).tolist()) + ','\n",
-    "        data.append([chrom, start, end, name, score, strand, thickStart, thickEnd, itemRgb, blockCount, blockSizes, blockStarts])\n",
-    "    df_bed12 = pd.DataFrame(data=data, columns=cols_bed12).sort_values(['chrom', 'start'], ignore_index=True)\n",
-    "    df_bed12.to_csv(dir_interval_lists + il_name + '_bed12.bed', sep='\\t', index=False, header=False, lineterminator='\\n')\n",
-    "df_bed12.head(20)"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 9,
-   "id": "e68947d8-93b1-4d4b-820f-fe7e33e7b04c",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
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-       "<style scoped>\n",
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-       "\n",
-       "    .dataframe tbody tr th {\n",
-       "        vertical-align: top;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe thead th {\n",
-       "        text-align: right;\n",
-       "    }\n",
-       "</style>\n",
-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>1</th>\n",
-       "      <th>2482077</th>\n",
-       "      <th>2492453</th>\n",
-       "      <th>gc19_pc.prom::gencode::TNFRSF14::ENSG00000157873.13</th>\n",
-       "      <th>1000</th>\n",
-       "      <th>+</th>\n",
-       "      <th>2482077.1</th>\n",
-       "      <th>2492453.1</th>\n",
-       "      <th>0</th>\n",
-       "      <th>7</th>\n",
-       "      <th>104,200,117,98,262,68,228,</th>\n",
-       "      <th>0,4800,5035,5629,8902,9346,10148,</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2985531</td>\n",
-       "      <td>3316553</td>\n",
-       "      <td>gc19_pc.prom::gencode::PRDM16::ENSG00000142611.12</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>2985531</td>\n",
-       "      <td>3316553</td>\n",
-       "      <td>0</td>\n",
-       "      <td>8</td>\n",
-       "      <td>200,108,135,188,250,180,91,168,</td>\n",
-       "      <td>0,335,174964,175176,175539,327323,327632,330854,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6257617</td>\n",
-       "      <td>6272948</td>\n",
-       "      <td>gc19_pc.prom::gencode::RPL22::ENSG00000116251.5</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>-</td>\n",
-       "      <td>6257617</td>\n",
-       "      <td>6272948</td>\n",
-       "      <td>0</td>\n",
-       "      <td>13</td>\n",
-       "      <td>88,181,10,2,200,200,66,200,50,4,44,65,149,</td>\n",
-       "      <td>0,219,1796,1996,2055,3285,5737,5937,11487,1183...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6845183</td>\n",
-       "      <td>7806225</td>\n",
-       "      <td>gc19_pc.prom::gencode::CAMTA1::ENSG00000171735.14</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>6845183</td>\n",
-       "      <td>7806225</td>\n",
-       "      <td>0</td>\n",
-       "      <td>9</td>\n",
-       "      <td>200,149,233,116,61,101,132,118,68,</td>\n",
-       "      <td>0,458,3971,951084,951423,959590,959905,960583,...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11175720</td>\n",
-       "      <td>11322764</td>\n",
-       "      <td>gc19_pc.prom::gencode::MTOR::ENSG00000198793.8</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>-</td>\n",
-       "      <td>11175720</td>\n",
-       "      <td>11322764</td>\n",
-       "      <td>0</td>\n",
-       "      <td>8</td>\n",
-       "      <td>200,200,668,57,264,239,131,200,</td>\n",
-       "      <td>0,15895,16630,18624,18823,19295,146644,146844,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16170358</td>\n",
-       "      <td>16207440</td>\n",
-       "      <td>gc19_pc.prom::gencode::SPEN::ENSG00000065526.6</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>16170358</td>\n",
-       "      <td>16207440</td>\n",
-       "      <td>0</td>\n",
-       "      <td>10</td>\n",
-       "      <td>234,860,200,164,256,251,200,362,218,215,</td>\n",
-       "      <td>0,828,3800,7479,8257,26581,29438,30610,32821,3...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20033</th>\n",
-       "      <td>Y</td>\n",
-       "      <td>27768063</td>\n",
-       "      <td>27768263</td>\n",
-       "      <td>gc19_pc.prom::gencode::CDY1::ENSG00000172288.6</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>27768063</td>\n",
-       "      <td>27768263</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>200,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20034</th>\n",
-       "      <td>Y</td>\n",
-       "      <td>28114689</td>\n",
-       "      <td>28115089</td>\n",
-       "      <td>gc19_pc.prom::gencode::AC007965.1::ENSG0000026...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>-</td>\n",
-       "      <td>28114689</td>\n",
-       "      <td>28115089</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>180,200,</td>\n",
-       "      <td>0,200,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20035</th>\n",
-       "      <td>Y</td>\n",
-       "      <td>59100279</td>\n",
-       "      <td>59100479</td>\n",
-       "      <td>gc19_pc.prom::gencode::SPRY3::ENSGR0000168939.6</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>59100279</td>\n",
-       "      <td>59100479</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>200,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20036</th>\n",
-       "      <td>Y</td>\n",
-       "      <td>59213761</td>\n",
-       "      <td>59214246</td>\n",
-       "      <td>gc19_pc.prom::gencode::VAMP7::ENSGR0000124333.10</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>59213761</td>\n",
-       "      <td>59214246</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>200,123,</td>\n",
-       "      <td>0,362,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20037</th>\n",
-       "      <td>Y</td>\n",
-       "      <td>59330051</td>\n",
-       "      <td>59330576</td>\n",
-       "      <td>gc19_pc.prom::gencode::IL9R::ENSGR0000124334.12</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>+</td>\n",
-       "      <td>59330051</td>\n",
-       "      <td>59330576</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>200,112,</td>\n",
-       "      <td>0,413,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>20038 rows × 12 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "       1   2482077   2492453  \\\n",
-       "0      1   2985531   3316553   \n",
-       "1      1   6257617   6272948   \n",
-       "2      1   6845183   7806225   \n",
-       "3      1  11175720  11322764   \n",
-       "4      1  16170358  16207440   \n",
-       "...   ..       ...       ...   \n",
-       "20033  Y  27768063  27768263   \n",
-       "20034  Y  28114689  28115089   \n",
-       "20035  Y  59100279  59100479   \n",
-       "20036  Y  59213761  59214246   \n",
-       "20037  Y  59330051  59330576   \n",
-       "\n",
-       "      gc19_pc.prom::gencode::TNFRSF14::ENSG00000157873.13  1000  +  2482077.1  \\\n",
-       "0      gc19_pc.prom::gencode::PRDM16::ENSG00000142611.12   1000  +    2985531   \n",
-       "1        gc19_pc.prom::gencode::RPL22::ENSG00000116251.5   1000  -    6257617   \n",
-       "2      gc19_pc.prom::gencode::CAMTA1::ENSG00000171735.14   1000  +    6845183   \n",
-       "3         gc19_pc.prom::gencode::MTOR::ENSG00000198793.8   1000  -   11175720   \n",
-       "4         gc19_pc.prom::gencode::SPEN::ENSG00000065526.6   1000  +   16170358   \n",
-       "...                                                  ...    ... ..        ...   \n",
-       "20033     gc19_pc.prom::gencode::CDY1::ENSG00000172288.6   1000  +   27768063   \n",
-       "20034  gc19_pc.prom::gencode::AC007965.1::ENSG0000026...   1000  -   28114689   \n",
-       "20035    gc19_pc.prom::gencode::SPRY3::ENSGR0000168939.6   1000  +   59100279   \n",
-       "20036   gc19_pc.prom::gencode::VAMP7::ENSGR0000124333.10   1000  +   59213761   \n",
-       "20037    gc19_pc.prom::gencode::IL9R::ENSGR0000124334.12   1000  +   59330051   \n",
-       "\n",
-       "       2492453.1  0   7                  104,200,117,98,262,68,228,  \\\n",
-       "0        3316553  0   8             200,108,135,188,250,180,91,168,   \n",
-       "1        6272948  0  13  88,181,10,2,200,200,66,200,50,4,44,65,149,   \n",
-       "2        7806225  0   9          200,149,233,116,61,101,132,118,68,   \n",
-       "3       11322764  0   8             200,200,668,57,264,239,131,200,   \n",
-       "4       16207440  0  10    234,860,200,164,256,251,200,362,218,215,   \n",
-       "...          ... ..  ..                                         ...   \n",
-       "20033   27768263  0   1                                        200,   \n",
-       "20034   28115089  0   2                                    180,200,   \n",
-       "20035   59100479  0   1                                        200,   \n",
-       "20036   59214246  0   2                                    200,123,   \n",
-       "20037   59330576  0   2                                    200,112,   \n",
-       "\n",
-       "                       0,4800,5035,5629,8902,9346,10148,  \n",
-       "0       0,335,174964,175176,175539,327323,327632,330854,  \n",
-       "1      0,219,1796,1996,2055,3285,5737,5937,11487,1183...  \n",
-       "2      0,458,3971,951084,951423,959590,959905,960583,...  \n",
-       "3         0,15895,16630,18624,18823,19295,146644,146844,  \n",
-       "4      0,828,3800,7479,8257,26581,29438,30610,32821,3...  \n",
-       "...                                                  ...  \n",
-       "20033                                                 0,  \n",
-       "20034                                             0,200,  \n",
-       "20035                                                 0,  \n",
-       "20036                                             0,362,  \n",
-       "20037                                             0,413,  \n",
-       "\n",
-       "[20038 rows x 12 columns]"
-      ]
-     },
-     "execution_count": 9,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "pd.read_csv('./interval_lists/gc19_pc.prom.bed', sep='\\t')"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 10,
-   "id": "3c295c02-ad73-4ef9-9b99-5c207b58fdaa",
-   "metadata": {},
-   "outputs": [
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-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
-       "      <th>start</th>\n",
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-       "      <th>enhancer_hg38</th>\n",
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-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1705210</td>\n",
-       "      <td>1715089</td>\n",
-       "      <td>chr1:1773772-1783650</td>\n",
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-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1751224</td>\n",
-       "      <td>1841253</td>\n",
-       "      <td>chr1:1819786-1909814</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>2222043</td>\n",
-       "      <td>2256622</td>\n",
-       "      <td>chr1:2290605-2325183</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>2476985</td>\n",
-       "      <td>2481874</td>\n",
-       "      <td>chr1:2545547-2550435</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>3571879</td>\n",
-       "      <td>3595579</td>\n",
-       "      <td>chr1:3655316-3679015</td>\n",
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-       "    <tr>\n",
-       "      <th>1424</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>135245814</td>\n",
-       "      <td>135261884</td>\n",
-       "      <td>chr9:132370428-132386497</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1425</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>135978382</td>\n",
-       "      <td>136023022</td>\n",
-       "      <td>chr9:133102996-133147635</td>\n",
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-       "      <th>1426</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>136809701</td>\n",
-       "      <td>136845830</td>\n",
-       "      <td>chr9:133944580-133980708</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1427</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>139114103</td>\n",
-       "      <td>139137520</td>\n",
-       "      <td>chr9:136222258-136245674</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1428</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>140519742</td>\n",
-       "      <td>140658171</td>\n",
-       "      <td>chr9:137625291-137763719</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>1429 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "     chromosome      start        end             enhancer_hg38\n",
-       "0          chr1    1705210    1715089      chr1:1773772-1783650\n",
-       "1          chr1    1751224    1841253      chr1:1819786-1909814\n",
-       "2          chr1    2222043    2256622      chr1:2290605-2325183\n",
-       "3          chr1    2476985    2481874      chr1:2545547-2550435\n",
-       "4          chr1    3571879    3595579      chr1:3655316-3679015\n",
-       "...         ...        ...        ...                       ...\n",
-       "1424       chr9  135245814  135261884  chr9:132370428-132386497\n",
-       "1425       chr9  135978382  136023022  chr9:133102996-133147635\n",
-       "1426       chr9  136809701  136845830  chr9:133944580-133980708\n",
-       "1427       chr9  139114103  139137520  chr9:136222258-136245674\n",
-       "1428       chr9  140519742  140658171  chr9:137625291-137763719\n",
-       "\n",
-       "[1429 rows x 4 columns]"
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-       "      <th>chromosome</th>\n",
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-       "      <th>enhancer_hg38</th>\n",
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-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106032614</td>\n",
-       "      <td>106032974</td>\n",
-       "      <td>chr14:105566278-105566637</td>\n",
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-       "      <th>1</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106041491</td>\n",
-       "      <td>106041971</td>\n",
-       "      <td>chr14:105575155-105575634</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106048351</td>\n",
-       "      <td>106048676</td>\n",
-       "      <td>chr14:105582015-105582339</td>\n",
-       "    </tr>\n",
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-       "      <th>3</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106050491</td>\n",
-       "      <td>106054731</td>\n",
-       "      <td>chr14:105584155-105588394</td>\n",
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-       "      <th>4</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106054315</td>\n",
-       "      <td>106056795</td>\n",
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-       "      <th>...</th>\n",
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-       "      <td>...</td>\n",
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-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>90</th>\n",
-       "      <td>chr22</td>\n",
-       "      <td>21025149</td>\n",
-       "      <td>21025185</td>\n",
-       "      <td>chr22:22026077-22881392</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>91</th>\n",
-       "      <td>chr13</td>\n",
-       "      <td>48996567</td>\n",
-       "      <td>48996634</td>\n",
-       "      <td>chr22:22026077-22881392</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>92</th>\n",
-       "      <td>chr3</td>\n",
-       "      <td>186029623</td>\n",
-       "      <td>186029950</td>\n",
-       "      <td>chr22:22026077-22881392</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>93</th>\n",
-       "      <td>chr22</td>\n",
-       "      <td>23235933</td>\n",
-       "      <td>23265082</td>\n",
-       "      <td>chr22:22893754-22922910</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>94</th>\n",
-       "      <td>chr22</td>\n",
-       "      <td>23700399</td>\n",
-       "      <td>23700999</td>\n",
-       "      <td>chr22:23358213-23358812</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>95 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chromosome      start        end              enhancer_hg38\n",
-       "0       chr14  106032614  106032974  chr14:105566278-105566637\n",
-       "1       chr14  106041491  106041971  chr14:105575155-105575634\n",
-       "2       chr14  106048351  106048676  chr14:105582015-105582339\n",
-       "3       chr14  106050491  106054731  chr14:105584155-105588394\n",
-       "4       chr14  106054315  106056795  chr14:105587979-105590458\n",
-       "..        ...        ...        ...                        ...\n",
-       "90      chr22   21025149   21025185    chr22:22026077-22881392\n",
-       "91      chr13   48996567   48996634    chr22:22026077-22881392\n",
-       "92       chr3  186029623  186029950    chr22:22026077-22881392\n",
-       "93      chr22   23235933   23265082    chr22:22893754-22922910\n",
-       "94      chr22   23700399   23700999    chr22:23358213-23358812\n",
-       "\n",
-       "[95 rows x 4 columns]"
-      ]
-     },
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-       "  <thead>\n",
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-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
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-       "  <tbody>\n",
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-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>150546616</td>\n",
-       "      <td>150552004</td>\n",
-       "      <td>chr1:150574141-150579528</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>203273727</td>\n",
-       "      <td>203276488</td>\n",
-       "      <td>chr1:203304600-203307360</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>226924119</td>\n",
-       "      <td>226926747</td>\n",
-       "      <td>chr1:226736419-226739046</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr10</td>\n",
-       "      <td>63659531</td>\n",
-       "      <td>63666480</td>\n",
-       "      <td>chr10:61899773-61906721</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr11</td>\n",
-       "      <td>128389025</td>\n",
-       "      <td>128392119</td>\n",
-       "      <td>chr11:128519131-128522224</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>chr12</td>\n",
-       "      <td>8762070</td>\n",
-       "      <td>8765407</td>\n",
-       "      <td>chr12:8609475-8612811</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>chr12</td>\n",
-       "      <td>92535690</td>\n",
-       "      <td>92540320</td>\n",
-       "      <td>chr12:92141915-92146544</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>chr12</td>\n",
-       "      <td>113493744</td>\n",
-       "      <td>113519862</td>\n",
-       "      <td>chr12:113055940-113082057</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>chr12</td>\n",
-       "      <td>122454746</td>\n",
-       "      <td>122467180</td>\n",
-       "      <td>chr12:122016841-122029274</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>chr13</td>\n",
-       "      <td>75981170</td>\n",
-       "      <td>75984325</td>\n",
-       "      <td>chr13:75407035-75410189</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>69256132</td>\n",
-       "      <td>69262207</td>\n",
-       "      <td>chr14:68789416-68795490</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106066053</td>\n",
-       "      <td>106072343</td>\n",
-       "      <td>chr14:105599717-105606006</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106091190</td>\n",
-       "      <td>106095703</td>\n",
-       "      <td>chr14:105624854-105629366</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106110025</td>\n",
-       "      <td>106115350</td>\n",
-       "      <td>chr14:105643689-105649013</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106172909</td>\n",
-       "      <td>106178778</td>\n",
-       "      <td>chr14:105706573-105712441</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106208188</td>\n",
-       "      <td>106215693</td>\n",
-       "      <td>chr14:105741852-105749356</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106235994</td>\n",
-       "      <td>106243520</td>\n",
-       "      <td>chr14:105769658-105777183</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106317638</td>\n",
-       "      <td>106338808</td>\n",
-       "      <td>chr14:105851306-105872945</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106333677</td>\n",
-       "      <td>106333727</td>\n",
-       "      <td>chr14:105851306-105872945</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106333640</td>\n",
-       "      <td>106333677</td>\n",
-       "      <td>chr14:105851306-105872945</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>20</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106333577</td>\n",
-       "      <td>106333627</td>\n",
-       "      <td>chr14:105851306-105872945</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>21</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106333577</td>\n",
-       "      <td>106333698</td>\n",
-       "      <td>chr14:105851306-105872945</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>22</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106347194</td>\n",
-       "      <td>106387925</td>\n",
-       "      <td>chr14:105881337-105922066</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>23</th>\n",
-       "      <td>chr15</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>21207475</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>24</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106515683</td>\n",
-       "      <td>106515744</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>25</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106689843</td>\n",
-       "      <td>106689878</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>26</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106728345</td>\n",
-       "      <td>106728400</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>27</th>\n",
-       "      <td>chr10</td>\n",
-       "      <td>127005812</td>\n",
-       "      <td>127005928</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>28</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>107187023</td>\n",
-       "      <td>107187125</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>29</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>82325519</td>\n",
-       "      <td>82325572</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30</th>\n",
-       "      <td>chr12</td>\n",
-       "      <td>55649940</td>\n",
-       "      <td>55649976</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>31</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>223477472</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>32</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>91932681</td>\n",
-       "      <td>91932720</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>33</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106730649</td>\n",
-       "      <td>106730702</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>34</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>106731182</td>\n",
-       "      <td>106731314</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>35</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>107160361</td>\n",
-       "      <td>107160782</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>36</th>\n",
-       "      <td>chr14</td>\n",
-       "      <td>107173399</td>\n",
-       "      <td>107173999</td>\n",
-       "      <td>chr14:106713675-106851398</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>37</th>\n",
-       "      <td>chr16</td>\n",
-       "      <td>10965148</td>\n",
-       "      <td>10974698</td>\n",
-       "      <td>chr16:10871292-10880841</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>38</th>\n",
-       "      <td>chr16</td>\n",
-       "      <td>85931861</td>\n",
-       "      <td>85942691</td>\n",
-       "      <td>chr16:85898256-85909085</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>39</th>\n",
-       "      <td>chr17</td>\n",
-       "      <td>56408639</td>\n",
-       "      <td>56409500</td>\n",
-       "      <td>chr17:58331279-58332139</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>40</th>\n",
-       "      <td>chr18</td>\n",
-       "      <td>30346733</td>\n",
-       "      <td>30351942</td>\n",
-       "      <td>chr18:32766771-32771979</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>41</th>\n",
-       "      <td>chr18</td>\n",
-       "      <td>60982535</td>\n",
-       "      <td>60988825</td>\n",
-       "      <td>chr18:63315303-63321592</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>42</th>\n",
-       "      <td>chr19</td>\n",
-       "      <td>16435856</td>\n",
-       "      <td>16438767</td>\n",
-       "      <td>chr19:16325046-16327956</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>43</th>\n",
-       "      <td>chr2</td>\n",
-       "      <td>89127574</td>\n",
-       "      <td>89145342</td>\n",
-       "      <td>chr2:88828062-88845829</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>44</th>\n",
-       "      <td>chr2</td>\n",
-       "      <td>89150933</td>\n",
-       "      <td>89165371</td>\n",
-       "      <td>chr2:88851421-88865859</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>45</th>\n",
-       "      <td>chr2</td>\n",
-       "      <td>136873437</td>\n",
-       "      <td>136876401</td>\n",
-       "      <td>chr2:136115868-136118831</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>46</th>\n",
-       "      <td>chr22</td>\n",
-       "      <td>22724244</td>\n",
-       "      <td>22735821</td>\n",
-       "      <td>chr22:22369877-22381452</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>47</th>\n",
-       "      <td>chr22</td>\n",
-       "      <td>23213974</td>\n",
-       "      <td>23246765</td>\n",
-       "      <td>chr22:22871796-22904585</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>48</th>\n",
-       "      <td>chr3</td>\n",
-       "      <td>32021168</td>\n",
-       "      <td>32023964</td>\n",
-       "      <td>chr3:31979677-31982472</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>49</th>\n",
-       "      <td>chr3</td>\n",
-       "      <td>187455028</td>\n",
-       "      <td>187468250</td>\n",
-       "      <td>chr3:187737241-187750462</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>50</th>\n",
-       "      <td>chr4</td>\n",
-       "      <td>40193633</td>\n",
-       "      <td>40209531</td>\n",
-       "      <td>chr4:40192014-40207911</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>51</th>\n",
-       "      <td>chr5</td>\n",
-       "      <td>158522416</td>\n",
-       "      <td>158528394</td>\n",
-       "      <td>chr5:159095409-159101386</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>52</th>\n",
-       "      <td>chr6</td>\n",
-       "      <td>37138219</td>\n",
-       "      <td>37144149</td>\n",
-       "      <td>chr6:37170444-37176373</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>53</th>\n",
-       "      <td>chr6</td>\n",
-       "      <td>91003076</td>\n",
-       "      <td>91010908</td>\n",
-       "      <td>chr6:90293358-90301189</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>54</th>\n",
-       "      <td>chr6</td>\n",
-       "      <td>134492661</td>\n",
-       "      <td>134496923</td>\n",
-       "      <td>chr6:134171524-134175785</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>55</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>37023716</td>\n",
-       "      <td>37036421</td>\n",
-       "      <td>chr9:37023720-37036424</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>56</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>37383460</td>\n",
-       "      <td>37385303</td>\n",
-       "      <td>chr9:37383464-37385306</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>57</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>12991505</td>\n",
-       "      <td>12995311</td>\n",
-       "      <td>chrX:12973387-12977192</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chromosome      start        end              enhancer_hg38\n",
-       "0        chr1  150546616  150552004   chr1:150574141-150579528\n",
-       "1        chr1  203273727  203276488   chr1:203304600-203307360\n",
-       "2        chr1  226924119  226926747   chr1:226736419-226739046\n",
-       "3       chr10   63659531   63666480    chr10:61899773-61906721\n",
-       "4       chr11  128389025  128392119  chr11:128519131-128522224\n",
-       "5       chr12    8762070    8765407      chr12:8609475-8612811\n",
-       "6       chr12   92535690   92540320    chr12:92141915-92146544\n",
-       "7       chr12  113493744  113519862  chr12:113055940-113082057\n",
-       "8       chr12  122454746  122467180  chr12:122016841-122029274\n",
-       "9       chr13   75981170   75984325    chr13:75407035-75410189\n",
-       "10      chr14   69256132   69262207    chr14:68789416-68795490\n",
-       "11      chr14  106066053  106072343  chr14:105599717-105606006\n",
-       "12      chr14  106091190  106095703  chr14:105624854-105629366\n",
-       "13      chr14  106110025  106115350  chr14:105643689-105649013\n",
-       "14      chr14  106172909  106178778  chr14:105706573-105712441\n",
-       "15      chr14  106208188  106215693  chr14:105741852-105749356\n",
-       "16      chr14  106235994  106243520  chr14:105769658-105777183\n",
-       "17      chr14  106317638  106338808  chr14:105851306-105872945\n",
-       "18      chr14  106333677  106333727  chr14:105851306-105872945\n",
-       "19      chr14  106333640  106333677  chr14:105851306-105872945\n",
-       "20      chr14  106333577  106333627  chr14:105851306-105872945\n",
-       "21      chr14  106333577  106333698  chr14:105851306-105872945\n",
-       "22      chr14  106347194  106387925  chr14:105881337-105922066\n",
-       "23      chr15   21207433   21207475  chr14:106713675-106851398\n",
-       "24      chr14  106515683  106515744  chr14:106713675-106851398\n",
-       "25      chr14  106689843  106689878  chr14:106713675-106851398\n",
-       "26      chr14  106728345  106728400  chr14:106713675-106851398\n",
-       "27      chr10  127005812  127005928  chr14:106713675-106851398\n",
-       "28      chr14  107187023  107187125  chr14:106713675-106851398\n",
-       "29       chrX   82325519   82325572  chr14:106713675-106851398\n",
-       "30      chr12   55649940   55649976  chr14:106713675-106851398\n",
-       "31       chr1  223477472  223477546  chr14:106713675-106851398\n",
-       "32       chr1   91932681   91932720  chr14:106713675-106851398\n",
-       "33      chr14  106730649  106730702  chr14:106713675-106851398\n",
-       "34      chr14  106731182  106731314  chr14:106713675-106851398\n",
-       "35      chr14  107160361  107160782  chr14:106713675-106851398\n",
-       "36      chr14  107173399  107173999  chr14:106713675-106851398\n",
-       "37      chr16   10965148   10974698    chr16:10871292-10880841\n",
-       "38      chr16   85931861   85942691    chr16:85898256-85909085\n",
-       "39      chr17   56408639   56409500    chr17:58331279-58332139\n",
-       "40      chr18   30346733   30351942    chr18:32766771-32771979\n",
-       "41      chr18   60982535   60988825    chr18:63315303-63321592\n",
-       "42      chr19   16435856   16438767    chr19:16325046-16327956\n",
-       "43       chr2   89127574   89145342     chr2:88828062-88845829\n",
-       "44       chr2   89150933   89165371     chr2:88851421-88865859\n",
-       "45       chr2  136873437  136876401   chr2:136115868-136118831\n",
-       "46      chr22   22724244   22735821    chr22:22369877-22381452\n",
-       "47      chr22   23213974   23246765    chr22:22871796-22904585\n",
-       "48       chr3   32021168   32023964     chr3:31979677-31982472\n",
-       "49       chr3  187455028  187468250   chr3:187737241-187750462\n",
-       "50       chr4   40193633   40209531     chr4:40192014-40207911\n",
-       "51       chr5  158522416  158528394   chr5:159095409-159101386\n",
-       "52       chr6   37138219   37144149     chr6:37170444-37176373\n",
-       "53       chr6   91003076   91010908     chr6:90293358-90301189\n",
-       "54       chr6  134492661  134496923   chr6:134171524-134175785\n",
-       "55       chr9   37023716   37036421     chr9:37023720-37036424\n",
-       "56       chr9   37383460   37385303     chr9:37383464-37385306\n",
-       "57       chrX   12991505   12995311     chrX:12973387-12977192"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
-       "<div>\n",
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>enhancer_hg38</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1342400</td>\n",
-       "      <td>1342510</td>\n",
-       "      <td>chr1:1407021-1407130</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>6258480</td>\n",
-       "      <td>6259620</td>\n",
-       "      <td>chr1:6198421-6199560</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>8021850</td>\n",
-       "      <td>8022220</td>\n",
-       "      <td>chr1:7961791-7962160</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>11072800</td>\n",
-       "      <td>11073390</td>\n",
-       "      <td>chr1:11012744-11013333</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>16839600</td>\n",
-       "      <td>16841510</td>\n",
-       "      <td>chr1:16513106-16515015</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>747</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>130834640</td>\n",
-       "      <td>130834790</td>\n",
-       "      <td>chr9:128072362-128072511</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>748</th>\n",
-       "      <td>chr9</td>\n",
-       "      <td>134553080</td>\n",
-       "      <td>134553280</td>\n",
-       "      <td>chr9:131677694-131677893</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>749</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>12974220</td>\n",
-       "      <td>12975860</td>\n",
-       "      <td>chrX:12956102-12957741</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>750</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>24073160</td>\n",
-       "      <td>24073260</td>\n",
-       "      <td>chrX:24055044-24055143</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>751</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>70401750</td>\n",
-       "      <td>70401910</td>\n",
-       "      <td>chrX:71181901-71182060</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>752 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "    chromosome      start        end             enhancer_hg38\n",
-       "0         chr1    1342400    1342510      chr1:1407021-1407130\n",
-       "1         chr1    6258480    6259620      chr1:6198421-6199560\n",
-       "2         chr1    8021850    8022220      chr1:7961791-7962160\n",
-       "3         chr1   11072800   11073390    chr1:11012744-11013333\n",
-       "4         chr1   16839600   16841510    chr1:16513106-16515015\n",
-       "..         ...        ...        ...                       ...\n",
-       "747       chr9  130834640  130834790  chr9:128072362-128072511\n",
-       "748       chr9  134553080  134553280  chr9:131677694-131677893\n",
-       "749       chrX   12974220   12975860    chrX:12956102-12957741\n",
-       "750       chrX   24073160   24073260    chrX:24055044-24055143\n",
-       "751       chrX   70401750   70401910    chrX:71181901-71182060\n",
-       "\n",
-       "[752 rows x 4 columns]"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
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-       "      <th>enhancer_hg38</th>\n",
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-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1706412</td>\n",
-       "      <td>1732343</td>\n",
-       "      <td>chr1:1774973-1800904</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>1751668</td>\n",
-       "      <td>1842316</td>\n",
-       "      <td>chr1:1820229-1910877</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>4059831</td>\n",
-       "      <td>4133780</td>\n",
-       "      <td>chr1:3999771-4073720</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>6616886</td>\n",
-       "      <td>6664806</td>\n",
-       "      <td>chr1:6556826-6604746</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>7391931</td>\n",
-       "      <td>7440079</td>\n",
-       "      <td>chr1:7331871-7380018</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2294</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>131613124</td>\n",
-       "      <td>131626145</td>\n",
-       "      <td>chrX:132479096-132492117</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2295</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>135817164</td>\n",
-       "      <td>135864668</td>\n",
-       "      <td>chrX:136735005-136782509</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2296</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>153229992</td>\n",
-       "      <td>153241022</td>\n",
-       "      <td>chrX:153964541-153975571</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2297</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>153245353</td>\n",
-       "      <td>153256834</td>\n",
-       "      <td>chrX:153979902-153991383</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2298</th>\n",
-       "      <td>chrX</td>\n",
-       "      <td>153271196</td>\n",
-       "      <td>153289362</td>\n",
-       "      <td>chrX:154005745-154023911</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>2299 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "     chromosome      start        end             enhancer_hg38\n",
-       "0          chr1    1706412    1732343      chr1:1774973-1800904\n",
-       "1          chr1    1751668    1842316      chr1:1820229-1910877\n",
-       "2          chr1    4059831    4133780      chr1:3999771-4073720\n",
-       "3          chr1    6616886    6664806      chr1:6556826-6604746\n",
-       "4          chr1    7391931    7440079      chr1:7331871-7380018\n",
-       "...         ...        ...        ...                       ...\n",
-       "2294       chrX  131613124  131626145  chrX:132479096-132492117\n",
-       "2295       chrX  135817164  135864668  chrX:136735005-136782509\n",
-       "2296       chrX  153229992  153241022  chrX:153964541-153975571\n",
-       "2297       chrX  153245353  153256834  chrX:153979902-153991383\n",
-       "2298       chrX  153271196  153289362  chrX:154005745-154023911\n",
-       "\n",
-       "[2299 rows x 4 columns]"
-      ]
-     },
-     "metadata": {},
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-    {
-     "data": {
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-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chromosome</th>\n",
-       "      <th>start</th>\n",
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-       "      <th>enhancer_hg38</th>\n",
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-       "      <th>0</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>27610</td>\n",
-       "      <td>29320</td>\n",
-       "      <td>chr1:27611-29320</td>\n",
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-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>713220</td>\n",
-       "      <td>713660</td>\n",
-       "      <td>chr1:777841-778280</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>724060</td>\n",
-       "      <td>727180</td>\n",
-       "      <td>chr1:788681-791800</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>824880</td>\n",
-       "      <td>825300</td>\n",
-       "      <td>chr1:889501-889920</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>chr1</td>\n",
-       "      <td>902180</td>\n",
-       "      <td>902660</td>\n",
-       "      <td>chr1:966801-967280</td>\n",
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-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18749</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>58827340</td>\n",
-       "      <td>58827540</td>\n",
-       "      <td>chrY:56763331-56763530</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18750</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>58855890</td>\n",
-       "      <td>58856100</td>\n",
-       "      <td>chrY:56734771-56734980</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18751</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>58971880</td>\n",
-       "      <td>58973420</td>\n",
-       "      <td>chrY:56825734-56827273</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18752</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>58974460</td>\n",
-       "      <td>58974660</td>\n",
-       "      <td>chrY:56828314-56828513</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18753</th>\n",
-       "      <td>chrY</td>\n",
-       "      <td>58976850</td>\n",
-       "      <td>58997920</td>\n",
-       "      <td>chrY:56830704-56851773</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>18754 rows × 4 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "      chromosome     start       end           enhancer_hg38\n",
-       "0           chr1     27610     29320        chr1:27611-29320\n",
-       "1           chr1    713220    713660      chr1:777841-778280\n",
-       "2           chr1    724060    727180      chr1:788681-791800\n",
-       "3           chr1    824880    825300      chr1:889501-889920\n",
-       "4           chr1    902180    902660      chr1:966801-967280\n",
-       "...          ...       ...       ...                     ...\n",
-       "18749       chrY  58827340  58827540  chrY:56763331-56763530\n",
-       "18750       chrY  58855890  58856100  chrY:56734771-56734980\n",
-       "18751       chrY  58971880  58973420  chrY:56825734-56827273\n",
-       "18752       chrY  58974460  58974660  chrY:56828314-56828513\n",
-       "18753       chrY  58976850  58997920  chrY:56830704-56851773\n",
-       "\n",
-       "[18754 rows x 4 columns]"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "source": [
-    "dict_enhancers = {}\n",
-    "for f in enhancer_lists:\n",
-    "    df = pd.read_csv(dir_interval_lists + f, sep = '\\t', names=['chromosome', 'start', 'end', 'enhancer_hg38', 'drop'])\n",
-    "    df = df[df.columns[:-1]]\n",
-    "    if df.enhancer_hg38.astype(str).str[:3].unique()[0] == 'chr':\n",
-    "        dict_enhancers[f] = df\n",
-    "        display(df)"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 11,
-   "id": "bb94d92f-a8ff-4810-be87-ec0d91d6bb13",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
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-       "    <tr>\n",
-       "      <th>1</th>\n",
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-       "      <td>1751224</td>\n",
-       "      <td>1841253</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
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-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>90029,</td>\n",
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-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2222043</td>\n",
-       "      <td>2256622</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2222043</td>\n",
-       "      <td>2256622</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>34579,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>2476985</td>\n",
-       "      <td>2481874</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>2476985</td>\n",
-       "      <td>2481874</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4889,</td>\n",
-       "      <td>0,</td>\n",
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-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>3571879</td>\n",
-       "      <td>3595579</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>3571879</td>\n",
-       "      <td>3595579</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>23700,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9120100</td>\n",
-       "      <td>9143791</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9120100</td>\n",
-       "      <td>9143791</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>23691,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9460230</td>\n",
-       "      <td>9489886</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9460230</td>\n",
-       "      <td>9489886</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>29656,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9711773</td>\n",
-       "      <td>9793450</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9711773</td>\n",
-       "      <td>9793450</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>81677,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11862760</td>\n",
-       "      <td>11876548</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11862760</td>\n",
-       "      <td>11876548</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>13788,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>1</td>\n",
-       "      <td>12099036</td>\n",
-       "      <td>12112488</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>12099036</td>\n",
-       "      <td>12112488</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>13452,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>1</td>\n",
-       "      <td>12192311</td>\n",
-       "      <td>12233319</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>12192311</td>\n",
-       "      <td>12233319</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>41008,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>1</td>\n",
-       "      <td>14025975</td>\n",
-       "      <td>14095686</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>14025975</td>\n",
-       "      <td>14095686</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>69711,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16150096</td>\n",
-       "      <td>16179237</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16150096</td>\n",
-       "      <td>16179237</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>29141,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16969445</td>\n",
-       "      <td>17034545</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16969445</td>\n",
-       "      <td>17034545</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>65100,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16987768</td>\n",
-       "      <td>207808943</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16987768</td>\n",
-       "      <td>207808943</td>\n",
-       "      <td>0</td>\n",
-       "      <td>44</td>\n",
-       "      <td>26,231,96,46,49,39,30,32,66,49,44,78,34,56,58,...</td>\n",
-       "      <td>0,55503744,103554727,103568268,103575745,10358...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>1</td>\n",
-       "      <td>17059115</td>\n",
-       "      <td>17086792</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>17059115</td>\n",
-       "      <td>17086792</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>27677,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>1</td>\n",
-       "      <td>17215258</td>\n",
-       "      <td>17241269</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>17215258</td>\n",
-       "      <td>17241269</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>26011,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>1</td>\n",
-       "      <td>19772019</td>\n",
-       "      <td>19807688</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>19772019</td>\n",
-       "      <td>19807688</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>35669,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>1</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>0</td>\n",
-       "      <td>14</td>\n",
-       "      <td>39,74,116,36,61,35,55,53,132,421,600,102,42,53,</td>\n",
-       "      <td>70725248,202270039,105798379,34442507,85308250...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>1</td>\n",
-       "      <td>21611055</td>\n",
-       "      <td>21635087</td>\n",
-       "      <td>PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>21611055</td>\n",
-       "      <td>21635087</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>24032,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom     start        end  \\\n",
-       "0      1   1705210    1715089   \n",
-       "1      1   1751224    1841253   \n",
-       "2      1   2222043    2256622   \n",
-       "3      1   2476985    2481874   \n",
-       "4      1   3571879    3595579   \n",
-       "5      1   9120100    9143791   \n",
-       "6      1   9460230    9489886   \n",
-       "7      1   9711773    9793450   \n",
-       "8      1  11862760   11876548   \n",
-       "9      1  12099036   12112488   \n",
-       "10     1  12192311   12233319   \n",
-       "11     1  14025975   14095686   \n",
-       "12     1  16150096   16179237   \n",
-       "13     1  16969445   17034545   \n",
-       "14     1  16987768  207808943   \n",
-       "15     1  17059115   17086792   \n",
-       "16     1  17215258   17241269   \n",
-       "17     1  19772019   19807688   \n",
-       "18     1  21207433  223477546   \n",
-       "19     1  21611055   21635087   \n",
-       "\n",
-       "                                                 name  score strand  \\\n",
-       "0   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "1   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "2   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "3   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "4   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "5   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "6   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "7   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "8   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "9   PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "10  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "11  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "12  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "13  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "14  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "15  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "16  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "17  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "18  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "19  PaytonDLBCLsuperenhancershg19sort::dlbcl::chr1...   1000      .   \n",
-       "\n",
-       "    thickStart   thickEnd  itemRgb  blockCount  \\\n",
-       "0      1705210    1715089        0           1   \n",
-       "1      1751224    1841253        0           1   \n",
-       "2      2222043    2256622        0           1   \n",
-       "3      2476985    2481874        0           1   \n",
-       "4      3571879    3595579        0           1   \n",
-       "5      9120100    9143791        0           1   \n",
-       "6      9460230    9489886        0           1   \n",
-       "7      9711773    9793450        0           1   \n",
-       "8     11862760   11876548        0           1   \n",
-       "9     12099036   12112488        0           1   \n",
-       "10    12192311   12233319        0           1   \n",
-       "11    14025975   14095686        0           1   \n",
-       "12    16150096   16179237        0           1   \n",
-       "13    16969445   17034545        0           1   \n",
-       "14    16987768  207808943        0          44   \n",
-       "15    17059115   17086792        0           1   \n",
-       "16    17215258   17241269        0           1   \n",
-       "17    19772019   19807688        0           1   \n",
-       "18    21207433  223477546        0          14   \n",
-       "19    21611055   21635087        0           1   \n",
-       "\n",
-       "                                           blockSizes  \\\n",
-       "0                                               9879,   \n",
-       "1                                              90029,   \n",
-       "2                                              34579,   \n",
-       "3                                               4889,   \n",
-       "4                                              23700,   \n",
-       "5                                              23691,   \n",
-       "6                                              29656,   \n",
-       "7                                              81677,   \n",
-       "8                                              13788,   \n",
-       "9                                              13452,   \n",
-       "10                                             41008,   \n",
-       "11                                             69711,   \n",
-       "12                                             29141,   \n",
-       "13                                             65100,   \n",
-       "14  26,231,96,46,49,39,30,32,66,49,44,78,34,56,58,...   \n",
-       "15                                             27677,   \n",
-       "16                                             26011,   \n",
-       "17                                             35669,   \n",
-       "18    39,74,116,36,61,35,55,53,132,421,600,102,42,53,   \n",
-       "19                                             24032,   \n",
-       "\n",
-       "                                          blockStarts  \n",
-       "0                                                  0,  \n",
-       "1                                                  0,  \n",
-       "2                                                  0,  \n",
-       "3                                                  0,  \n",
-       "4                                                  0,  \n",
-       "5                                                  0,  \n",
-       "6                                                  0,  \n",
-       "7                                                  0,  \n",
-       "8                                                  0,  \n",
-       "9                                                  0,  \n",
-       "10                                                 0,  \n",
-       "11                                                 0,  \n",
-       "12                                                 0,  \n",
-       "13                                                 0,  \n",
-       "14  0,55503744,103554727,103568268,103575745,10358...  \n",
-       "15                                                 0,  \n",
-       "16                                                 0,  \n",
-       "17                                                 0,  \n",
-       "18  70725248,202270039,105798379,34442507,85308250...  \n",
-       "19                                                 0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>4591240</td>\n",
-       "      <td>148924163</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>4591240</td>\n",
-       "      <td>148924163</td>\n",
-       "      <td>0</td>\n",
-       "      <td>12</td>\n",
-       "      <td>31,75,62,35,51,90,102,51,34,27,57,42,</td>\n",
-       "      <td>112567135,144331824,144332172,144332888,342997...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>0</td>\n",
-       "      <td>44</td>\n",
-       "      <td>39,74,116,36,51,37,29,62,47,36,63,72,80,73,148...</td>\n",
-       "      <td>70725248,202270039,105798379,34442507,85245375...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>13</td>\n",
-       "      <td>21025149</td>\n",
-       "      <td>186029950</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>21025149</td>\n",
-       "      <td>186029950</td>\n",
-       "      <td>0</td>\n",
-       "      <td>4</td>\n",
-       "      <td>67,36,843098,327,</td>\n",
-       "      <td>27971418,0,1355325,165004474,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106032614</td>\n",
-       "      <td>106032974</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106032614</td>\n",
-       "      <td>106032974</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>360,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106041491</td>\n",
-       "      <td>106041971</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106041491</td>\n",
-       "      <td>106041971</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>480,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106048351</td>\n",
-       "      <td>106048676</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106048351</td>\n",
-       "      <td>106048676</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>325,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106050491</td>\n",
-       "      <td>106054731</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106050491</td>\n",
-       "      <td>106054731</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4240,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106054315</td>\n",
-       "      <td>106056795</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106054315</td>\n",
-       "      <td>106056795</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>2480,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106064028</td>\n",
-       "      <td>106068064</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106064028</td>\n",
-       "      <td>106068064</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4036,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106069177</td>\n",
-       "      <td>106070455</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106069177</td>\n",
-       "      <td>106070455</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1278,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106088249</td>\n",
-       "      <td>106092402</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106088249</td>\n",
-       "      <td>106092402</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4153,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106093066</td>\n",
-       "      <td>106096258</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106093066</td>\n",
-       "      <td>106096258</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3192,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106107302</td>\n",
-       "      <td>106111126</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106107302</td>\n",
-       "      <td>106111126</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3824,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106111791</td>\n",
-       "      <td>106115058</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106111791</td>\n",
-       "      <td>106115058</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3267,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106152458</td>\n",
-       "      <td>106152818</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106152458</td>\n",
-       "      <td>106152818</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>360,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106162616</td>\n",
-       "      <td>106162991</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106162616</td>\n",
-       "      <td>106162991</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>375,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106167280</td>\n",
-       "      <td>106167601</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106167280</td>\n",
-       "      <td>106167601</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>321,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106170725</td>\n",
-       "      <td>106175001</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106170725</td>\n",
-       "      <td>106175001</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4276,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106175047</td>\n",
-       "      <td>106178297</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106175047</td>\n",
-       "      <td>106178297</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3250,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106204099</td>\n",
-       "      <td>106209407</td>\n",
-       "      <td>Immunoglobulinfunctionalelementssorthg19::dlbc...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106204099</td>\n",
-       "      <td>106209407</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>5308,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom      start        end  \\\n",
-       "0      1    4591240  148924163   \n",
-       "1      1   21207433  223477546   \n",
-       "2     13   21025149  186029950   \n",
-       "3     14  106032614  106032974   \n",
-       "4     14  106041491  106041971   \n",
-       "5     14  106048351  106048676   \n",
-       "6     14  106050491  106054731   \n",
-       "7     14  106054315  106056795   \n",
-       "8     14  106064028  106068064   \n",
-       "9     14  106069177  106070455   \n",
-       "10    14  106088249  106092402   \n",
-       "11    14  106093066  106096258   \n",
-       "12    14  106107302  106111126   \n",
-       "13    14  106111791  106115058   \n",
-       "14    14  106152458  106152818   \n",
-       "15    14  106162616  106162991   \n",
-       "16    14  106167280  106167601   \n",
-       "17    14  106170725  106175001   \n",
-       "18    14  106175047  106178297   \n",
-       "19    14  106204099  106209407   \n",
-       "\n",
-       "                                                 name  score strand  \\\n",
-       "0   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "1   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "2   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "3   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "4   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "5   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "6   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "7   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "8   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "9   Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "10  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "11  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "12  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "13  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "14  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "15  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "16  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "17  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "18  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "19  Immunoglobulinfunctionalelementssorthg19::dlbc...   1000      .   \n",
-       "\n",
-       "    thickStart   thickEnd  itemRgb  blockCount  \\\n",
-       "0      4591240  148924163        0          12   \n",
-       "1     21207433  223477546        0          44   \n",
-       "2     21025149  186029950        0           4   \n",
-       "3    106032614  106032974        0           1   \n",
-       "4    106041491  106041971        0           1   \n",
-       "5    106048351  106048676        0           1   \n",
-       "6    106050491  106054731        0           1   \n",
-       "7    106054315  106056795        0           1   \n",
-       "8    106064028  106068064        0           1   \n",
-       "9    106069177  106070455        0           1   \n",
-       "10   106088249  106092402        0           1   \n",
-       "11   106093066  106096258        0           1   \n",
-       "12   106107302  106111126        0           1   \n",
-       "13   106111791  106115058        0           1   \n",
-       "14   106152458  106152818        0           1   \n",
-       "15   106162616  106162991        0           1   \n",
-       "16   106167280  106167601        0           1   \n",
-       "17   106170725  106175001        0           1   \n",
-       "18   106175047  106178297        0           1   \n",
-       "19   106204099  106209407        0           1   \n",
-       "\n",
-       "                                           blockSizes  \\\n",
-       "0               31,75,62,35,51,90,102,51,34,27,57,42,   \n",
-       "1   39,74,116,36,51,37,29,62,47,36,63,72,80,73,148...   \n",
-       "2                                   67,36,843098,327,   \n",
-       "3                                                360,   \n",
-       "4                                                480,   \n",
-       "5                                                325,   \n",
-       "6                                               4240,   \n",
-       "7                                               2480,   \n",
-       "8                                               4036,   \n",
-       "9                                               1278,   \n",
-       "10                                              4153,   \n",
-       "11                                              3192,   \n",
-       "12                                              3824,   \n",
-       "13                                              3267,   \n",
-       "14                                               360,   \n",
-       "15                                               375,   \n",
-       "16                                               321,   \n",
-       "17                                              4276,   \n",
-       "18                                              3250,   \n",
-       "19                                              5308,   \n",
-       "\n",
-       "                                          blockStarts  \n",
-       "0   112567135,144331824,144332172,144332888,342997...  \n",
-       "1   70725248,202270039,105798379,34442507,85245375...  \n",
-       "2                       27971418,0,1355325,165004474,  \n",
-       "3                                                  0,  \n",
-       "4                                                  0,  \n",
-       "5                                                  0,  \n",
-       "6                                                  0,  \n",
-       "7                                                  0,  \n",
-       "8                                                  0,  \n",
-       "9                                                  0,  \n",
-       "10                                                 0,  \n",
-       "11                                                 0,  \n",
-       "12                                                 0,  \n",
-       "13                                                 0,  \n",
-       "14                                                 0,  \n",
-       "15                                                 0,  \n",
-       "16                                                 0,  \n",
-       "17                                                 0,  \n",
-       "18                                                 0,  \n",
-       "19                                                 0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>21207433</td>\n",
-       "      <td>223477546</td>\n",
-       "      <td>0</td>\n",
-       "      <td>14</td>\n",
-       "      <td>39,74,116,36,61,35,55,53,132,421,600,102,42,53,</td>\n",
-       "      <td>70725248,202270039,105798379,34442507,85308250...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>150546616</td>\n",
-       "      <td>150552004</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr1:150...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>150546616</td>\n",
-       "      <td>150552004</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>5388,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>203273727</td>\n",
-       "      <td>203276488</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr1:203...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>203273727</td>\n",
-       "      <td>203276488</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>2761,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>226924119</td>\n",
-       "      <td>226926747</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr1:226...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>226924119</td>\n",
-       "      <td>226926747</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>2628,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>10</td>\n",
-       "      <td>63659531</td>\n",
-       "      <td>63666480</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr10:61...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>63659531</td>\n",
-       "      <td>63666480</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>6949,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>11</td>\n",
-       "      <td>128389025</td>\n",
-       "      <td>128392119</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr11:12...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>128389025</td>\n",
-       "      <td>128392119</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3094,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>12</td>\n",
-       "      <td>8762070</td>\n",
-       "      <td>8765407</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr12:86...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8762070</td>\n",
-       "      <td>8765407</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3337,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>12</td>\n",
-       "      <td>92535690</td>\n",
-       "      <td>92540320</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr12:92...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>92535690</td>\n",
-       "      <td>92540320</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4630,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>12</td>\n",
-       "      <td>113493744</td>\n",
-       "      <td>113519862</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr12:11...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>113493744</td>\n",
-       "      <td>113519862</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>26118,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>12</td>\n",
-       "      <td>122454746</td>\n",
-       "      <td>122467180</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr12:12...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>122454746</td>\n",
-       "      <td>122467180</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>12434,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>13</td>\n",
-       "      <td>75981170</td>\n",
-       "      <td>75984325</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr13:75...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>75981170</td>\n",
-       "      <td>75984325</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3155,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>14</td>\n",
-       "      <td>69256132</td>\n",
-       "      <td>69262207</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:68...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>69256132</td>\n",
-       "      <td>69262207</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>6075,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106066053</td>\n",
-       "      <td>106072343</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106066053</td>\n",
-       "      <td>106072343</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>6290,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106091190</td>\n",
-       "      <td>106095703</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106091190</td>\n",
-       "      <td>106095703</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>4513,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106110025</td>\n",
-       "      <td>106115350</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106110025</td>\n",
-       "      <td>106115350</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>5325,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106172909</td>\n",
-       "      <td>106178778</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106172909</td>\n",
-       "      <td>106178778</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>5869,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106208188</td>\n",
-       "      <td>106215693</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106208188</td>\n",
-       "      <td>106215693</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>7505,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106235994</td>\n",
-       "      <td>106243520</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106235994</td>\n",
-       "      <td>106243520</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>7526,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106317638</td>\n",
-       "      <td>106338808</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106317638</td>\n",
-       "      <td>106338808</td>\n",
-       "      <td>0</td>\n",
-       "      <td>5</td>\n",
-       "      <td>21170,50,121,37,50,</td>\n",
-       "      <td>0,15939,15939,16002,16039,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>14</td>\n",
-       "      <td>106347194</td>\n",
-       "      <td>106387925</td>\n",
-       "      <td>PanHammarstromkategishg19sort::dlbcl::chr14:10...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>106347194</td>\n",
-       "      <td>106387925</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>40731,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom      start        end  \\\n",
-       "0      1   21207433  223477546   \n",
-       "1      1  150546616  150552004   \n",
-       "2      1  203273727  203276488   \n",
-       "3      1  226924119  226926747   \n",
-       "4     10   63659531   63666480   \n",
-       "5     11  128389025  128392119   \n",
-       "6     12    8762070    8765407   \n",
-       "7     12   92535690   92540320   \n",
-       "8     12  113493744  113519862   \n",
-       "9     12  122454746  122467180   \n",
-       "10    13   75981170   75984325   \n",
-       "11    14   69256132   69262207   \n",
-       "12    14  106066053  106072343   \n",
-       "13    14  106091190  106095703   \n",
-       "14    14  106110025  106115350   \n",
-       "15    14  106172909  106178778   \n",
-       "16    14  106208188  106215693   \n",
-       "17    14  106235994  106243520   \n",
-       "18    14  106317638  106338808   \n",
-       "19    14  106347194  106387925   \n",
-       "\n",
-       "                                                 name  score strand  \\\n",
-       "0   PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "1   PanHammarstromkategishg19sort::dlbcl::chr1:150...   1000      .   \n",
-       "2   PanHammarstromkategishg19sort::dlbcl::chr1:203...   1000      .   \n",
-       "3   PanHammarstromkategishg19sort::dlbcl::chr1:226...   1000      .   \n",
-       "4   PanHammarstromkategishg19sort::dlbcl::chr10:61...   1000      .   \n",
-       "5   PanHammarstromkategishg19sort::dlbcl::chr11:12...   1000      .   \n",
-       "6   PanHammarstromkategishg19sort::dlbcl::chr12:86...   1000      .   \n",
-       "7   PanHammarstromkategishg19sort::dlbcl::chr12:92...   1000      .   \n",
-       "8   PanHammarstromkategishg19sort::dlbcl::chr12:11...   1000      .   \n",
-       "9   PanHammarstromkategishg19sort::dlbcl::chr12:12...   1000      .   \n",
-       "10  PanHammarstromkategishg19sort::dlbcl::chr13:75...   1000      .   \n",
-       "11  PanHammarstromkategishg19sort::dlbcl::chr14:68...   1000      .   \n",
-       "12  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "13  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "14  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "15  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "16  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "17  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "18  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "19  PanHammarstromkategishg19sort::dlbcl::chr14:10...   1000      .   \n",
-       "\n",
-       "    thickStart   thickEnd  itemRgb  blockCount  \\\n",
-       "0     21207433  223477546        0          14   \n",
-       "1    150546616  150552004        0           1   \n",
-       "2    203273727  203276488        0           1   \n",
-       "3    226924119  226926747        0           1   \n",
-       "4     63659531   63666480        0           1   \n",
-       "5    128389025  128392119        0           1   \n",
-       "6      8762070    8765407        0           1   \n",
-       "7     92535690   92540320        0           1   \n",
-       "8    113493744  113519862        0           1   \n",
-       "9    122454746  122467180        0           1   \n",
-       "10    75981170   75984325        0           1   \n",
-       "11    69256132   69262207        0           1   \n",
-       "12   106066053  106072343        0           1   \n",
-       "13   106091190  106095703        0           1   \n",
-       "14   106110025  106115350        0           1   \n",
-       "15   106172909  106178778        0           1   \n",
-       "16   106208188  106215693        0           1   \n",
-       "17   106235994  106243520        0           1   \n",
-       "18   106317638  106338808        0           5   \n",
-       "19   106347194  106387925        0           1   \n",
-       "\n",
-       "                                         blockSizes  \\\n",
-       "0   39,74,116,36,61,35,55,53,132,421,600,102,42,53,   \n",
-       "1                                             5388,   \n",
-       "2                                             2761,   \n",
-       "3                                             2628,   \n",
-       "4                                             6949,   \n",
-       "5                                             3094,   \n",
-       "6                                             3337,   \n",
-       "7                                             4630,   \n",
-       "8                                            26118,   \n",
-       "9                                            12434,   \n",
-       "10                                            3155,   \n",
-       "11                                            6075,   \n",
-       "12                                            6290,   \n",
-       "13                                            4513,   \n",
-       "14                                            5325,   \n",
-       "15                                            5869,   \n",
-       "16                                            7505,   \n",
-       "17                                            7526,   \n",
-       "18                              21170,50,121,37,50,   \n",
-       "19                                           40731,   \n",
-       "\n",
-       "                                          blockStarts  \n",
-       "0   70725248,202270039,105798379,34442507,85308250...  \n",
-       "1                                                  0,  \n",
-       "2                                                  0,  \n",
-       "3                                                  0,  \n",
-       "4                                                  0,  \n",
-       "5                                                  0,  \n",
-       "6                                                  0,  \n",
-       "7                                                  0,  \n",
-       "8                                                  0,  \n",
-       "9                                                  0,  \n",
-       "10                                                 0,  \n",
-       "11                                                 0,  \n",
-       "12                                                 0,  \n",
-       "13                                                 0,  \n",
-       "14                                                 0,  \n",
-       "15                                                 0,  \n",
-       "16                                                 0,  \n",
-       "17                                                 0,  \n",
-       "18                         0,15939,15939,16002,16039,  \n",
-       "19                                                 0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
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-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1342400</td>\n",
-       "      <td>1342510</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:1407021...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1342400</td>\n",
-       "      <td>1342510</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>110,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6258480</td>\n",
-       "      <td>6259620</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:6198421...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6258480</td>\n",
-       "      <td>6259620</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1140,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>8021850</td>\n",
-       "      <td>8022220</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:7961791...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8021850</td>\n",
-       "      <td>8022220</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>370,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11072800</td>\n",
-       "      <td>11073390</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:1101274...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11072800</td>\n",
-       "      <td>11073390</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>590,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16839600</td>\n",
-       "      <td>16841510</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:1651310...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16839600</td>\n",
-       "      <td>16841510</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1910,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>1</td>\n",
-       "      <td>17221810</td>\n",
-       "      <td>17223710</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:1689531...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>17221810</td>\n",
-       "      <td>17223710</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1900,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>1</td>\n",
-       "      <td>19923600</td>\n",
-       "      <td>19924410</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:1959710...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>19923600</td>\n",
-       "      <td>19924410</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>810,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>1</td>\n",
-       "      <td>22352140</td>\n",
-       "      <td>22352450</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2202564...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>22352140</td>\n",
-       "      <td>22352450</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>310,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>1</td>\n",
-       "      <td>22379240</td>\n",
-       "      <td>22379960</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2205274...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>22379240</td>\n",
-       "      <td>22379960</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>720,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>1</td>\n",
-       "      <td>24151340</td>\n",
-       "      <td>24151840</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2382485...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>24151340</td>\n",
-       "      <td>24151840</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>500,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>1</td>\n",
-       "      <td>24286490</td>\n",
-       "      <td>24287080</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2396000...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>24286490</td>\n",
-       "      <td>24287080</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>590,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>1</td>\n",
-       "      <td>25573520</td>\n",
-       "      <td>25573790</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2524703...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>25573520</td>\n",
-       "      <td>25573790</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>270,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>1</td>\n",
-       "      <td>26323460</td>\n",
-       "      <td>26323700</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2599697...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>26323460</td>\n",
-       "      <td>26323700</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>240,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>1</td>\n",
-       "      <td>26324360</td>\n",
-       "      <td>26324510</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2599787...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>26324360</td>\n",
-       "      <td>26324510</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>150,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>1</td>\n",
-       "      <td>26758870</td>\n",
-       "      <td>26759310</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2643238...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>26758870</td>\n",
-       "      <td>26759310</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>440,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>1</td>\n",
-       "      <td>27070390</td>\n",
-       "      <td>27071040</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2674390...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>27070390</td>\n",
-       "      <td>27071040</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>650,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>1</td>\n",
-       "      <td>28655690</td>\n",
-       "      <td>28655790</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2832918...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>28655690</td>\n",
-       "      <td>28655790</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>100,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>1</td>\n",
-       "      <td>28832600</td>\n",
-       "      <td>28832730</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:2850608...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>28832600</td>\n",
-       "      <td>28832730</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>130,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>1</td>\n",
-       "      <td>31227470</td>\n",
-       "      <td>31227860</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:3075462...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>31227470</td>\n",
-       "      <td>31227860</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>390,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>1</td>\n",
-       "      <td>32394160</td>\n",
-       "      <td>32394730</td>\n",
-       "      <td>allsamplegt15scoregt1hg19::dlbcl::chr1:3192856...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>32394160</td>\n",
-       "      <td>32394730</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>570,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom     start       end  \\\n",
-       "0      1   1342400   1342510   \n",
-       "1      1   6258480   6259620   \n",
-       "2      1   8021850   8022220   \n",
-       "3      1  11072800  11073390   \n",
-       "4      1  16839600  16841510   \n",
-       "5      1  17221810  17223710   \n",
-       "6      1  19923600  19924410   \n",
-       "7      1  22352140  22352450   \n",
-       "8      1  22379240  22379960   \n",
-       "9      1  24151340  24151840   \n",
-       "10     1  24286490  24287080   \n",
-       "11     1  25573520  25573790   \n",
-       "12     1  26323460  26323700   \n",
-       "13     1  26324360  26324510   \n",
-       "14     1  26758870  26759310   \n",
-       "15     1  27070390  27071040   \n",
-       "16     1  28655690  28655790   \n",
-       "17     1  28832600  28832730   \n",
-       "18     1  31227470  31227860   \n",
-       "19     1  32394160  32394730   \n",
-       "\n",
-       "                                                 name  score strand  \\\n",
-       "0   allsamplegt15scoregt1hg19::dlbcl::chr1:1407021...   1000      .   \n",
-       "1   allsamplegt15scoregt1hg19::dlbcl::chr1:6198421...   1000      .   \n",
-       "2   allsamplegt15scoregt1hg19::dlbcl::chr1:7961791...   1000      .   \n",
-       "3   allsamplegt15scoregt1hg19::dlbcl::chr1:1101274...   1000      .   \n",
-       "4   allsamplegt15scoregt1hg19::dlbcl::chr1:1651310...   1000      .   \n",
-       "5   allsamplegt15scoregt1hg19::dlbcl::chr1:1689531...   1000      .   \n",
-       "6   allsamplegt15scoregt1hg19::dlbcl::chr1:1959710...   1000      .   \n",
-       "7   allsamplegt15scoregt1hg19::dlbcl::chr1:2202564...   1000      .   \n",
-       "8   allsamplegt15scoregt1hg19::dlbcl::chr1:2205274...   1000      .   \n",
-       "9   allsamplegt15scoregt1hg19::dlbcl::chr1:2382485...   1000      .   \n",
-       "10  allsamplegt15scoregt1hg19::dlbcl::chr1:2396000...   1000      .   \n",
-       "11  allsamplegt15scoregt1hg19::dlbcl::chr1:2524703...   1000      .   \n",
-       "12  allsamplegt15scoregt1hg19::dlbcl::chr1:2599697...   1000      .   \n",
-       "13  allsamplegt15scoregt1hg19::dlbcl::chr1:2599787...   1000      .   \n",
-       "14  allsamplegt15scoregt1hg19::dlbcl::chr1:2643238...   1000      .   \n",
-       "15  allsamplegt15scoregt1hg19::dlbcl::chr1:2674390...   1000      .   \n",
-       "16  allsamplegt15scoregt1hg19::dlbcl::chr1:2832918...   1000      .   \n",
-       "17  allsamplegt15scoregt1hg19::dlbcl::chr1:2850608...   1000      .   \n",
-       "18  allsamplegt15scoregt1hg19::dlbcl::chr1:3075462...   1000      .   \n",
-       "19  allsamplegt15scoregt1hg19::dlbcl::chr1:3192856...   1000      .   \n",
-       "\n",
-       "    thickStart  thickEnd  itemRgb  blockCount blockSizes blockStarts  \n",
-       "0      1342400   1342510        0           1       110,          0,  \n",
-       "1      6258480   6259620        0           1      1140,          0,  \n",
-       "2      8021850   8022220        0           1       370,          0,  \n",
-       "3     11072800  11073390        0           1       590,          0,  \n",
-       "4     16839600  16841510        0           1      1910,          0,  \n",
-       "5     17221810  17223710        0           1      1900,          0,  \n",
-       "6     19923600  19924410        0           1       810,          0,  \n",
-       "7     22352140  22352450        0           1       310,          0,  \n",
-       "8     22379240  22379960        0           1       720,          0,  \n",
-       "9     24151340  24151840        0           1       500,          0,  \n",
-       "10    24286490  24287080        0           1       590,          0,  \n",
-       "11    25573520  25573790        0           1       270,          0,  \n",
-       "12    26323460  26323700        0           1       240,          0,  \n",
-       "13    26324360  26324510        0           1       150,          0,  \n",
-       "14    26758870  26759310        0           1       440,          0,  \n",
-       "15    27070390  27071040        0           1       650,          0,  \n",
-       "16    28655690  28655790        0           1       100,          0,  \n",
-       "17    28832600  28832730        0           1       130,          0,  \n",
-       "18    31227470  31227860        0           1       390,          0,  \n",
-       "19    32394160  32394730        0           1       570,          0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
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-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1706412</td>\n",
-       "      <td>1732343</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:177...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1706412</td>\n",
-       "      <td>1732343</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>25931,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1751668</td>\n",
-       "      <td>1842316</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:182...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1751668</td>\n",
-       "      <td>1842316</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>90648,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>4059831</td>\n",
-       "      <td>4133780</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:399...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>4059831</td>\n",
-       "      <td>4133780</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>73949,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>6616886</td>\n",
-       "      <td>6664806</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:655...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>6616886</td>\n",
-       "      <td>6664806</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>47920,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>7391931</td>\n",
-       "      <td>7440079</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:733...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>7391931</td>\n",
-       "      <td>7440079</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>48148,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>1</td>\n",
-       "      <td>8454848</td>\n",
-       "      <td>8501956</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:839...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8454848</td>\n",
-       "      <td>8501956</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>47108,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>1</td>\n",
-       "      <td>8552366</td>\n",
-       "      <td>8594467</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:849...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8552366</td>\n",
-       "      <td>8594467</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>42101,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>1</td>\n",
-       "      <td>8933057</td>\n",
-       "      <td>8944097</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:887...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>8933057</td>\n",
-       "      <td>8944097</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>11040,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9120065</td>\n",
-       "      <td>9146380</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:906...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9120065</td>\n",
-       "      <td>9146380</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>26315,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9685649</td>\n",
-       "      <td>9719974</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:962...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9685649</td>\n",
-       "      <td>9719974</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>34325,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>1</td>\n",
-       "      <td>9839934</td>\n",
-       "      <td>9935747</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:977...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>9839934</td>\n",
-       "      <td>9935747</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>95813,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>1</td>\n",
-       "      <td>10814600</td>\n",
-       "      <td>10857062</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:107...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>10814600</td>\n",
-       "      <td>10857062</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>42462,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11617839</td>\n",
-       "      <td>11631808</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:115...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11617839</td>\n",
-       "      <td>11631808</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>13969,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>1</td>\n",
-       "      <td>12184746</td>\n",
-       "      <td>12245090</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:121...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>12184746</td>\n",
-       "      <td>12245090</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>60344,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>1</td>\n",
-       "      <td>13991869</td>\n",
-       "      <td>14091409</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:136...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>13991869</td>\n",
-       "      <td>14091409</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>99540,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16156216</td>\n",
-       "      <td>16178526</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:158...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16156216</td>\n",
-       "      <td>16178526</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>22310,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>1</td>\n",
-       "      <td>16274043</td>\n",
-       "      <td>16303645</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:159...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>16274043</td>\n",
-       "      <td>16303645</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>29602,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>1</td>\n",
-       "      <td>17221528</td>\n",
-       "      <td>17256732</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:168...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>17221528</td>\n",
-       "      <td>17256732</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>35204,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>1</td>\n",
-       "      <td>18250994</td>\n",
-       "      <td>18312398</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:179...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>18250994</td>\n",
-       "      <td>18312398</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>61404,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>1</td>\n",
-       "      <td>18361395</td>\n",
-       "      <td>18375787</td>\n",
-       "      <td>Bradnersuperenhancershg19sort::dlbcl::chr1:180...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>18361395</td>\n",
-       "      <td>18375787</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>14392,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom     start       end  \\\n",
-       "0      1   1706412   1732343   \n",
-       "1      1   1751668   1842316   \n",
-       "2      1   4059831   4133780   \n",
-       "3      1   6616886   6664806   \n",
-       "4      1   7391931   7440079   \n",
-       "5      1   8454848   8501956   \n",
-       "6      1   8552366   8594467   \n",
-       "7      1   8933057   8944097   \n",
-       "8      1   9120065   9146380   \n",
-       "9      1   9685649   9719974   \n",
-       "10     1   9839934   9935747   \n",
-       "11     1  10814600  10857062   \n",
-       "12     1  11617839  11631808   \n",
-       "13     1  12184746  12245090   \n",
-       "14     1  13991869  14091409   \n",
-       "15     1  16156216  16178526   \n",
-       "16     1  16274043  16303645   \n",
-       "17     1  17221528  17256732   \n",
-       "18     1  18250994  18312398   \n",
-       "19     1  18361395  18375787   \n",
-       "\n",
-       "                                                 name  score strand  \\\n",
-       "0   Bradnersuperenhancershg19sort::dlbcl::chr1:177...   1000      .   \n",
-       "1   Bradnersuperenhancershg19sort::dlbcl::chr1:182...   1000      .   \n",
-       "2   Bradnersuperenhancershg19sort::dlbcl::chr1:399...   1000      .   \n",
-       "3   Bradnersuperenhancershg19sort::dlbcl::chr1:655...   1000      .   \n",
-       "4   Bradnersuperenhancershg19sort::dlbcl::chr1:733...   1000      .   \n",
-       "5   Bradnersuperenhancershg19sort::dlbcl::chr1:839...   1000      .   \n",
-       "6   Bradnersuperenhancershg19sort::dlbcl::chr1:849...   1000      .   \n",
-       "7   Bradnersuperenhancershg19sort::dlbcl::chr1:887...   1000      .   \n",
-       "8   Bradnersuperenhancershg19sort::dlbcl::chr1:906...   1000      .   \n",
-       "9   Bradnersuperenhancershg19sort::dlbcl::chr1:962...   1000      .   \n",
-       "10  Bradnersuperenhancershg19sort::dlbcl::chr1:977...   1000      .   \n",
-       "11  Bradnersuperenhancershg19sort::dlbcl::chr1:107...   1000      .   \n",
-       "12  Bradnersuperenhancershg19sort::dlbcl::chr1:115...   1000      .   \n",
-       "13  Bradnersuperenhancershg19sort::dlbcl::chr1:121...   1000      .   \n",
-       "14  Bradnersuperenhancershg19sort::dlbcl::chr1:136...   1000      .   \n",
-       "15  Bradnersuperenhancershg19sort::dlbcl::chr1:158...   1000      .   \n",
-       "16  Bradnersuperenhancershg19sort::dlbcl::chr1:159...   1000      .   \n",
-       "17  Bradnersuperenhancershg19sort::dlbcl::chr1:168...   1000      .   \n",
-       "18  Bradnersuperenhancershg19sort::dlbcl::chr1:179...   1000      .   \n",
-       "19  Bradnersuperenhancershg19sort::dlbcl::chr1:180...   1000      .   \n",
-       "\n",
-       "    thickStart  thickEnd  itemRgb  blockCount blockSizes blockStarts  \n",
-       "0      1706412   1732343        0           1     25931,          0,  \n",
-       "1      1751668   1842316        0           1     90648,          0,  \n",
-       "2      4059831   4133780        0           1     73949,          0,  \n",
-       "3      6616886   6664806        0           1     47920,          0,  \n",
-       "4      7391931   7440079        0           1     48148,          0,  \n",
-       "5      8454848   8501956        0           1     47108,          0,  \n",
-       "6      8552366   8594467        0           1     42101,          0,  \n",
-       "7      8933057   8944097        0           1     11040,          0,  \n",
-       "8      9120065   9146380        0           1     26315,          0,  \n",
-       "9      9685649   9719974        0           1     34325,          0,  \n",
-       "10     9839934   9935747        0           1     95813,          0,  \n",
-       "11    10814600  10857062        0           1     42462,          0,  \n",
-       "12    11617839  11631808        0           1     13969,          0,  \n",
-       "13    12184746  12245090        0           1     60344,          0,  \n",
-       "14    13991869  14091409        0           1     99540,          0,  \n",
-       "15    16156216  16178526        0           1     22310,          0,  \n",
-       "16    16274043  16303645        0           1     29602,          0,  \n",
-       "17    17221528  17256732        0           1     35204,          0,  \n",
-       "18    18250994  18312398        0           1     61404,          0,  \n",
-       "19    18361395  18375787        0           1     14392,          0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
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-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>chrom</th>\n",
-       "      <th>start</th>\n",
-       "      <th>end</th>\n",
-       "      <th>name</th>\n",
-       "      <th>score</th>\n",
-       "      <th>strand</th>\n",
-       "      <th>thickStart</th>\n",
-       "      <th>thickEnd</th>\n",
-       "      <th>itemRgb</th>\n",
-       "      <th>blockCount</th>\n",
-       "      <th>blockSizes</th>\n",
-       "      <th>blockStarts</th>\n",
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-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>27610</td>\n",
-       "      <td>29320</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:27611-29...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>27610</td>\n",
-       "      <td>29320</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1710,</td>\n",
-       "      <td>0,</td>\n",
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-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>713220</td>\n",
-       "      <td>713660</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:777841-7...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>713220</td>\n",
-       "      <td>713660</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>440,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>724060</td>\n",
-       "      <td>727180</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:788681-7...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>724060</td>\n",
-       "      <td>727180</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>3120,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>824880</td>\n",
-       "      <td>825300</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:889501-8...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>824880</td>\n",
-       "      <td>825300</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>420,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>902180</td>\n",
-       "      <td>902660</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:966801-9...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>902180</td>\n",
-       "      <td>902660</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>480,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>5</th>\n",
-       "      <td>1</td>\n",
-       "      <td>948960</td>\n",
-       "      <td>949360</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1013581-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>948960</td>\n",
-       "      <td>949360</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>400,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>6</th>\n",
-       "      <td>1</td>\n",
-       "      <td>974090</td>\n",
-       "      <td>974710</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1038711-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>974090</td>\n",
-       "      <td>974710</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>620,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>7</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1003720</td>\n",
-       "      <td>1006540</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1068341-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1003720</td>\n",
-       "      <td>1006540</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>2820,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>8</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1050380</td>\n",
-       "      <td>1051430</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1115001-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1050380</td>\n",
-       "      <td>1051430</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1050,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>9</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1079440</td>\n",
-       "      <td>1080580</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1144061-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1079440</td>\n",
-       "      <td>1080580</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1140,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>10</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1135610</td>\n",
-       "      <td>1137540</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1200231-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1135610</td>\n",
-       "      <td>1137540</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1930,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>11</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1157410</td>\n",
-       "      <td>1158620</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1222031-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1157410</td>\n",
-       "      <td>1158620</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1210,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>12</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1207620</td>\n",
-       "      <td>1209040</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1272241-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1207620</td>\n",
-       "      <td>1209040</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1420,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>13</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1310170</td>\n",
-       "      <td>1310370</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1374791-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1310170</td>\n",
-       "      <td>1310370</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>200,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>14</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1324280</td>\n",
-       "      <td>1325490</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1388901-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1324280</td>\n",
-       "      <td>1325490</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1210,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>15</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1341390</td>\n",
-       "      <td>1342510</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1406011-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1341390</td>\n",
-       "      <td>1342510</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1120,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>16</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1397460</td>\n",
-       "      <td>1398640</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1462081-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1397460</td>\n",
-       "      <td>1398640</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>1180,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>17</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1407470</td>\n",
-       "      <td>1408360</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1472091-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1407470</td>\n",
-       "      <td>1408360</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>890,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>18</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1448070</td>\n",
-       "      <td>1448580</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1512691-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1448070</td>\n",
-       "      <td>1448580</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>510,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>19</th>\n",
-       "      <td>1</td>\n",
-       "      <td>1551480</td>\n",
-       "      <td>1551880</td>\n",
-       "      <td>allsamplegt5scoregt1hg19::dlbcl::chr1:1616101-...</td>\n",
-       "      <td>1000</td>\n",
-       "      <td>.</td>\n",
-       "      <td>1551480</td>\n",
-       "      <td>1551880</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>400,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "   chrom    start      end                                               name  \\\n",
-       "0      1    27610    29320  allsamplegt5scoregt1hg19::dlbcl::chr1:27611-29...   \n",
-       "1      1   713220   713660  allsamplegt5scoregt1hg19::dlbcl::chr1:777841-7...   \n",
-       "2      1   724060   727180  allsamplegt5scoregt1hg19::dlbcl::chr1:788681-7...   \n",
-       "3      1   824880   825300  allsamplegt5scoregt1hg19::dlbcl::chr1:889501-8...   \n",
-       "4      1   902180   902660  allsamplegt5scoregt1hg19::dlbcl::chr1:966801-9...   \n",
-       "5      1   948960   949360  allsamplegt5scoregt1hg19::dlbcl::chr1:1013581-...   \n",
-       "6      1   974090   974710  allsamplegt5scoregt1hg19::dlbcl::chr1:1038711-...   \n",
-       "7      1  1003720  1006540  allsamplegt5scoregt1hg19::dlbcl::chr1:1068341-...   \n",
-       "8      1  1050380  1051430  allsamplegt5scoregt1hg19::dlbcl::chr1:1115001-...   \n",
-       "9      1  1079440  1080580  allsamplegt5scoregt1hg19::dlbcl::chr1:1144061-...   \n",
-       "10     1  1135610  1137540  allsamplegt5scoregt1hg19::dlbcl::chr1:1200231-...   \n",
-       "11     1  1157410  1158620  allsamplegt5scoregt1hg19::dlbcl::chr1:1222031-...   \n",
-       "12     1  1207620  1209040  allsamplegt5scoregt1hg19::dlbcl::chr1:1272241-...   \n",
-       "13     1  1310170  1310370  allsamplegt5scoregt1hg19::dlbcl::chr1:1374791-...   \n",
-       "14     1  1324280  1325490  allsamplegt5scoregt1hg19::dlbcl::chr1:1388901-...   \n",
-       "15     1  1341390  1342510  allsamplegt5scoregt1hg19::dlbcl::chr1:1406011-...   \n",
-       "16     1  1397460  1398640  allsamplegt5scoregt1hg19::dlbcl::chr1:1462081-...   \n",
-       "17     1  1407470  1408360  allsamplegt5scoregt1hg19::dlbcl::chr1:1472091-...   \n",
-       "18     1  1448070  1448580  allsamplegt5scoregt1hg19::dlbcl::chr1:1512691-...   \n",
-       "19     1  1551480  1551880  allsamplegt5scoregt1hg19::dlbcl::chr1:1616101-...   \n",
-       "\n",
-       "    score strand  thickStart  thickEnd  itemRgb  blockCount blockSizes  \\\n",
-       "0    1000      .       27610     29320        0           1      1710,   \n",
-       "1    1000      .      713220    713660        0           1       440,   \n",
-       "2    1000      .      724060    727180        0           1      3120,   \n",
-       "3    1000      .      824880    825300        0           1       420,   \n",
-       "4    1000      .      902180    902660        0           1       480,   \n",
-       "5    1000      .      948960    949360        0           1       400,   \n",
-       "6    1000      .      974090    974710        0           1       620,   \n",
-       "7    1000      .     1003720   1006540        0           1      2820,   \n",
-       "8    1000      .     1050380   1051430        0           1      1050,   \n",
-       "9    1000      .     1079440   1080580        0           1      1140,   \n",
-       "10   1000      .     1135610   1137540        0           1      1930,   \n",
-       "11   1000      .     1157410   1158620        0           1      1210,   \n",
-       "12   1000      .     1207620   1209040        0           1      1420,   \n",
-       "13   1000      .     1310170   1310370        0           1       200,   \n",
-       "14   1000      .     1324280   1325490        0           1      1210,   \n",
-       "15   1000      .     1341390   1342510        0           1      1120,   \n",
-       "16   1000      .     1397460   1398640        0           1      1180,   \n",
-       "17   1000      .     1407470   1408360        0           1       890,   \n",
-       "18   1000      .     1448070   1448580        0           1       510,   \n",
-       "19   1000      .     1551480   1551880        0           1       400,   \n",
-       "\n",
-       "   blockStarts  \n",
-       "0           0,  \n",
-       "1           0,  \n",
-       "2           0,  \n",
-       "3           0,  \n",
-       "4           0,  \n",
-       "5           0,  \n",
-       "6           0,  \n",
-       "7           0,  \n",
-       "8           0,  \n",
-       "9           0,  \n",
-       "10          0,  \n",
-       "11          0,  \n",
-       "12          0,  \n",
-       "13          0,  \n",
-       "14          0,  \n",
-       "15          0,  \n",
-       "16          0,  \n",
-       "17          0,  \n",
-       "18          0,  \n",
-       "19          0,  "
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "source": [
-    "for key in dict_enhancers:\n",
-    "    df = dict_enhancers[key]\n",
-    "    il_name = key.split('.bed')[0].replace('.', '_')\n",
-    "    # data frame containing enhancers associated with each interval\n",
-    "    df_enhancers = df.enhancer_hg38.str.split(',', expand=True)\n",
-    "    # unique list of all enhancers in interval list\n",
-    "    enhancers = []\n",
-    "    for col in df_enhancers.columns:\n",
-    "        enhancers += df_enhancers[col][~df_enhancers[col].isna()].tolist()\n",
-    "    enhancers = np.unique(enhancers)\n",
-    "    # columns of bed12 file \n",
-    "    cols_bed12 = ['chrom', 'start', 'end', 'name', 'score', 'strand', 'thickStart', 'thickEnd', 'itemRgb', 'blockCount', 'blockSizes', 'blockStarts']\n",
-    "    data = []\n",
-    "    for e in enhancers:\n",
-    "        dfi = df.loc[np.any(df_enhancers==e, axis=1)].copy().sort_values(['chromosome', 'start'], ignore_index=True)\n",
-    "        # chromosome number\n",
-    "        chrom = dfi.chromosome.unique()[0][3:]\n",
-    "        # start position of first interval in set (zero-indexed)\n",
-    "        start = dfi.start.min()\n",
-    "        # end position of final interval in set (zero-indexed)\n",
-    "        end = dfi.end.max()\n",
-    "        # unique name for this set of annotations\n",
-    "        name = '{}::dlbcl::{}::NA'.format(il_name.replace('_', ''), e)\n",
-    "        # any non-negative number (we usually use 0)\n",
-    "        score = 1000\n",
-    "        # +, -, or . if no strand\n",
-    "        strand = '.'\n",
-    "        # same as start (for Dig)\n",
-    "        thickStart = start\n",
-    "        # same as end (for Dig)\n",
-    "        thickEnd = end\n",
-    "        # ignored (we usually set to 0)\n",
-    "        itemRgb = 0\n",
-    "        # number of intervals in the set\n",
-    "        blockCount = len(dfi)\n",
-    "        # # length of each interval in the set\n",
-    "        blockSizes = ','.join((dfi.end - dfi.start).astype(str).tolist()) + ','\n",
-    "        # # start position of each interval relative to start (so the first entry is always 0)\n",
-    "        blockStarts = ','.join((dfi.start - dfi.start.min()).astype(str).tolist()) + ','\n",
-    "        data.append([chrom, start, end, name, score, strand, thickStart, thickEnd, itemRgb, blockCount, blockSizes, blockStarts])\n",
-    "        \n",
-    "    df_bed12 = pd.DataFrame(data=data, columns=cols_bed12).sort_values(['chrom', 'start'], ignore_index=True)\n",
-    "    df_bed12.to_csv(dir_interval_lists + il_name + '_bed12.bed', sep='\\t', index=False, header=False, lineterminator='\\n')\n",
-    "    display(df_bed12.head(20))"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 12,
-   "id": "b6668884-a6bb-4dfd-aadf-fa67c6e70cdc",
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
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-       "\n",
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-       "        vertical-align: top;\n",
-       "    }\n",
-       "\n",
-       "    .dataframe thead th {\n",
-       "        text-align: right;\n",
-       "    }\n",
-       "</style>\n",
-       "<table border=\"1\" class=\"dataframe\">\n",
-       "  <thead>\n",
-       "    <tr style=\"text-align: right;\">\n",
-       "      <th></th>\n",
-       "      <th>1</th>\n",
-       "      <th>2266288</th>\n",
-       "      <th>2266598</th>\n",
-       "      <th>enhancers::chr1:2264800-2266800::NA::NA</th>\n",
-       "      <th>904</th>\n",
-       "      <th>.</th>\n",
-       "      <th>2266288.1</th>\n",
-       "      <th>2266598.1</th>\n",
-       "      <th>0</th>\n",
-       "      <th>1.1</th>\n",
-       "      <th>310,</th>\n",
-       "      <th>0,</th>\n",
-       "    </tr>\n",
-       "  </thead>\n",
-       "  <tbody>\n",
-       "    <tr>\n",
-       "      <th>0</th>\n",
-       "      <td>1</td>\n",
-       "      <td>3010985</td>\n",
-       "      <td>3011105</td>\n",
-       "      <td>enhancers::chr1:3010200-3011600::NA::NA</td>\n",
-       "      <td>905</td>\n",
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-       "      <td>3010985</td>\n",
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-       "      <td>120,</td>\n",
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-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>1</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11197757</td>\n",
-       "      <td>11200572</td>\n",
-       "      <td>enhancers::chr1:11197600-11200600::NA::NA</td>\n",
-       "      <td>909</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11197757</td>\n",
-       "      <td>11200572</td>\n",
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-       "      <td>3</td>\n",
-       "      <td>668,181,58,</td>\n",
-       "      <td>0,1378,2757,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>2</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11237375</td>\n",
-       "      <td>11237715</td>\n",
-       "      <td>enhancers::chr1:11235600-11238000::NA::NA</td>\n",
-       "      <td>900</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11237375</td>\n",
-       "      <td>11237715</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>340,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>3</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11246685</td>\n",
-       "      <td>11248729</td>\n",
-       "      <td>enhancers::chr1:11244800-11250000::NA::NA</td>\n",
-       "      <td>911</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11246685</td>\n",
-       "      <td>11248729</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>669,151,</td>\n",
-       "      <td>0,1893,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>4</th>\n",
-       "      <td>1</td>\n",
-       "      <td>11257069</td>\n",
-       "      <td>11257242</td>\n",
-       "      <td>enhancers::chr1:11257000-11258000::NA::NA</td>\n",
-       "      <td>900</td>\n",
-       "      <td>.</td>\n",
-       "      <td>11257069</td>\n",
-       "      <td>11257242</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>173,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>...</th>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "      <td>...</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30810</th>\n",
-       "      <td>X</td>\n",
-       "      <td>154417120</td>\n",
-       "      <td>154417479</td>\n",
-       "      <td>enhancers::chrX:154416000-154417800::NA::NA</td>\n",
-       "      <td>924</td>\n",
-       "      <td>.</td>\n",
-       "      <td>154417120</td>\n",
-       "      <td>154417479</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>359,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30811</th>\n",
-       "      <td>X</td>\n",
-       "      <td>154459477</td>\n",
-       "      <td>154459797</td>\n",
-       "      <td>enhancers::chrX:154459200-154460200::NA::NA</td>\n",
-       "      <td>905</td>\n",
-       "      <td>.</td>\n",
-       "      <td>154459477</td>\n",
-       "      <td>154459797</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>320,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30812</th>\n",
-       "      <td>X</td>\n",
-       "      <td>154543197</td>\n",
-       "      <td>154543363</td>\n",
-       "      <td>enhancers::chrX:154543000-154543600::NA::NA</td>\n",
-       "      <td>935</td>\n",
-       "      <td>.</td>\n",
-       "      <td>154543197</td>\n",
-       "      <td>154543363</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>166,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30813</th>\n",
-       "      <td>X</td>\n",
-       "      <td>154564200</td>\n",
-       "      <td>154564800</td>\n",
-       "      <td>enhancers::chrX:154564200-154564800::NA::NA</td>\n",
-       "      <td>908</td>\n",
-       "      <td>.</td>\n",
-       "      <td>154564200</td>\n",
-       "      <td>154564800</td>\n",
-       "      <td>0</td>\n",
-       "      <td>2</td>\n",
-       "      <td>75,317,</td>\n",
-       "      <td>0,283,</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>30814</th>\n",
-       "      <td>X</td>\n",
-       "      <td>154975537</td>\n",
-       "      <td>154975664</td>\n",
-       "      <td>enhancers::chrX:154974800-154975800::NA::NA</td>\n",
-       "      <td>909</td>\n",
-       "      <td>.</td>\n",
-       "      <td>154975537</td>\n",
-       "      <td>154975664</td>\n",
-       "      <td>0</td>\n",
-       "      <td>1</td>\n",
-       "      <td>127,</td>\n",
-       "      <td>0,</td>\n",
-       "    </tr>\n",
-       "  </tbody>\n",
-       "</table>\n",
-       "<p>30815 rows × 12 columns</p>\n",
-       "</div>"
-      ],
-      "text/plain": [
-       "       1    2266288    2266598      enhancers::chr1:2264800-2266800::NA::NA  \\\n",
-       "0      1    3010985    3011105      enhancers::chr1:3010200-3011600::NA::NA   \n",
-       "1      1   11197757   11200572    enhancers::chr1:11197600-11200600::NA::NA   \n",
-       "2      1   11237375   11237715    enhancers::chr1:11235600-11238000::NA::NA   \n",
-       "3      1   11246685   11248729    enhancers::chr1:11244800-11250000::NA::NA   \n",
-       "4      1   11257069   11257242    enhancers::chr1:11257000-11258000::NA::NA   \n",
-       "...   ..        ...        ...                                          ...   \n",
-       "30810  X  154417120  154417479  enhancers::chrX:154416000-154417800::NA::NA   \n",
-       "30811  X  154459477  154459797  enhancers::chrX:154459200-154460200::NA::NA   \n",
-       "30812  X  154543197  154543363  enhancers::chrX:154543000-154543600::NA::NA   \n",
-       "30813  X  154564200  154564800  enhancers::chrX:154564200-154564800::NA::NA   \n",
-       "30814  X  154975537  154975664  enhancers::chrX:154974800-154975800::NA::NA   \n",
-       "\n",
-       "       904  .  2266288.1  2266598.1  0  1.1         310,            0,  \n",
-       "0      905  .    3010985    3011105  0    1         120,            0,  \n",
-       "1      909  .   11197757   11200572  0    3  668,181,58,  0,1378,2757,  \n",
-       "2      900  .   11237375   11237715  0    1         340,            0,  \n",
-       "3      911  .   11246685   11248729  0    2     669,151,       0,1893,  \n",
-       "4      900  .   11257069   11257242  0    1         173,            0,  \n",
-       "...    ... ..        ...        ... ..  ...          ...           ...  \n",
-       "30810  924  .  154417120  154417479  0    1         359,            0,  \n",
-       "30811  905  .  154459477  154459797  0    1         320,            0,  \n",
-       "30812  935  .  154543197  154543363  0    1         166,            0,  \n",
-       "30813  908  .  154564200  154564800  0    2      75,317,        0,283,  \n",
-       "30814  909  .  154975537  154975664  0    1         127,            0,  \n",
-       "\n",
-       "[30815 rows x 12 columns]"
-      ]
-     },
-     "execution_count": 12,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
-    "pd.read_csv('./interval_lists/enhancers.bed', sep='\\t')"
-   ]
-  }
- ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.10.8"
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- "nbformat": 4,
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-}
diff --git a/generate_dig_report_coding.py b/generate_dig_report_coding.py
index 462133e..8cf544a 100644
--- a/generate_dig_report_coding.py
+++ b/generate_dig_report_coding.py
@@ -115,11 +115,16 @@ def generate_dig_report(path_to_dig_results, dir_output, cgc_list_path, pancan_l
     # Adding indicator of genes being part of the CGC or PanCan list
     df['CGC'] = df['GENE'].isin(cgc_list)
     df['PANCAN'] = df['GENE'].isin(pancan_list)
-    # Adding new columns for Non-synonymous SNVs + Indels
-    df['OBS_MUT'] = df['OBS_NONSYN'] + df['OBS_INDEL']
-    df['EXP_MUT'] = df['EXP_NONSYN'] + df['EXP_INDEL']
-    # Computing lower and upper bounds for the p-values
     muts_ts = list(mut_type.values())
+    if 'EXP_INDEL' in df.columns:
+        # Adding new columns for Non-synonymous SNVs + Indels
+        df['OBS_MUT'] = df['OBS_NONSYN'] + df['OBS_INDEL']
+        df['EXP_MUT'] = df['EXP_NONSYN'] + df['EXP_INDEL']
+    else:
+        for key in list(mut_type.keys()):
+            if 'indel' in key.lower():
+                del mut_type[key]
+    # Computing lower and upper bounds for the p-values
     muts_ts.remove('INDEL')
     muts_ts.remove('MUT')
     for m in muts_ts:
@@ -165,46 +170,47 @@ def generate_dig_report(path_to_dig_results, dir_output, cgc_list_path, pancan_l
             df.ALPHA,
             1 / (df.THETA * df['Pi_' + m] + 1)
         )
-    # total indel burden
-    df['PVAL_INDEL_BURDEN_recalc'] = nb_pvalue_greater_midp(
-        df.OBS_INDEL,
-        df.ALPHA_INDEL,
-        1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
-    )
-    df['PVAL_INDEL_BURDEN_unif'] = nb_pvalue_uniform_midp(
-        df.OBS_INDEL,
-        df.ALPHA_INDEL,
-        1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
-    )
-    df['PVAL_INDEL_BURDEN_lower'] = nb_pvalue_lower(
-        df.OBS_INDEL,
-        df.ALPHA_INDEL,
-        1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
-    )
-    df['PVAL_INDEL_BURDEN_upper'] = nb_pvalue_upper(
-        df.OBS_INDEL,
-        df.ALPHA_INDEL,
-        1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
-    )
-    # p-values for nonsynonymous SNVs + indels
-    col_mut = 'PVAL_MUT_BURDEN'
-    df[col_mut + '_recalc'] = np.nan
-    df[col_mut + '_unif'] = np.nan
-    df[col_mut + '_lower'] = np.nan
-    df[col_mut + '_upper'] = np.nan
-    for idx in df.index:
-        df.at[idx, col_mut + '_recalc'] = sp.stats.combine_pvalues(
-            [df.at[idx, 'PVAL_NONSYN_BURDEN_recalc'], df.at[idx, 'PVAL_INDEL_BURDEN_recalc']],
-            method='fisher')[1]
-        df.at[idx, col_mut + '_unif'] = sp.stats.combine_pvalues(
-            [df.at[idx, 'PVAL_NONSYN_BURDEN_unif'], df.at[idx, 'PVAL_INDEL_BURDEN_unif']],
-            method='fisher')[1]
-        df.at[idx, col_mut + '_lower'] = sp.stats.combine_pvalues(
-            [df.at[idx, 'PVAL_NONSYN_BURDEN_lower'], df.at[idx, 'PVAL_INDEL_BURDEN_lower']],
-            method='fisher')[1]
-        df.at[idx, col_mut + '_upper'] = sp.stats.combine_pvalues(
-            [df.at[idx, 'PVAL_NONSYN_BURDEN_upper'], df.at[idx, 'PVAL_INDEL_BURDEN_upper']],
-            method='fisher')[1]
+    if 'EXP_INDEL' in df.columns:
+        # total indel burden
+        df['PVAL_INDEL_BURDEN_recalc'] = nb_pvalue_greater_midp(
+            df.OBS_INDEL,
+            df.ALPHA_INDEL,
+            1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
+        )
+        df['PVAL_INDEL_BURDEN_unif'] = nb_pvalue_uniform_midp(
+            df.OBS_INDEL,
+            df.ALPHA_INDEL,
+            1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
+        )
+        df['PVAL_INDEL_BURDEN_lower'] = nb_pvalue_lower(
+            df.OBS_INDEL,
+            df.ALPHA_INDEL,
+            1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
+        )
+        df['PVAL_INDEL_BURDEN_upper'] = nb_pvalue_upper(
+            df.OBS_INDEL,
+            df.ALPHA_INDEL,
+            1 / (df.THETA_INDEL * df.Pi_INDEL + 1)
+        )
+        # p-values for nonsynonymous SNVs + indels
+        col_mut = 'PVAL_MUT_BURDEN'
+        df[col_mut + '_recalc'] = np.nan
+        df[col_mut + '_unif'] = np.nan
+        df[col_mut + '_lower'] = np.nan
+        df[col_mut + '_upper'] = np.nan
+        for idx in df.index:
+            df.at[idx, col_mut + '_recalc'] = sp.stats.combine_pvalues(
+                [df.at[idx, 'PVAL_NONSYN_BURDEN_recalc'], df.at[idx, 'PVAL_INDEL_BURDEN_recalc']],
+                method='fisher')[1]
+            df.at[idx, col_mut + '_unif'] = sp.stats.combine_pvalues(
+                [df.at[idx, 'PVAL_NONSYN_BURDEN_unif'], df.at[idx, 'PVAL_INDEL_BURDEN_unif']],
+                method='fisher')[1]
+            df.at[idx, col_mut + '_lower'] = sp.stats.combine_pvalues(
+                [df.at[idx, 'PVAL_NONSYN_BURDEN_lower'], df.at[idx, 'PVAL_INDEL_BURDEN_lower']],
+                method='fisher')[1]
+            df.at[idx, col_mut + '_upper'] = sp.stats.combine_pvalues(
+                [df.at[idx, 'PVAL_NONSYN_BURDEN_upper'], df.at[idx, 'PVAL_INDEL_BURDEN_upper']],
+                method='fisher')[1]
 
     def generate_plot_data(mut, bur, display_bounds, scatterpoint):
         """
diff --git a/generate_dig_report_combined.py b/generate_dig_report_combined.py
index 8b9b1a7..f842122 100644
--- a/generate_dig_report_combined.py
+++ b/generate_dig_report_combined.py
@@ -123,7 +123,7 @@ def generate_dig_report(
         '3utr': path_to_3utr_results
     }
     result_types = list(dig_outputs.keys())
-
+    cols_mt_set = set()
     for result_type in result_types:
 
         dfi = pd.read_csv(dig_outputs[result_type], sep='\t')
@@ -131,23 +131,34 @@ def generate_dig_report(
         if result_type == 'coding':
             dfi = dfi.set_index('GENE')
             df_comb = pd.DataFrame(index=dfi.index.copy())
-            col_obs = ['OBS_NONSYN', 'N_SAMP_NONSYN', 'OBS_INDEL']
-            col_pi = ['Pi_NONSYN', 'Pi_NONSYN', 'Pi_INDEL']
+            col_obs = ['OBS_NONSYN', 'N_SAMP_NONSYN']
+            col_pi = ['Pi_NONSYN', 'Pi_NONSYN']
             col_size = 'GENE_LENGTH'
         else:
             dfi['GENE'] = dfi.ELT.str.split('::', expand=True)[2]
             dfi = dfi.sort_values(['GENE', 'OBS_SNV'])
             dfi = dfi.set_index('GENE')
             dfi = dfi.loc[~dfi.index.duplicated()]
-            col_obs = ['OBS_SNV', 'OBS_SAMPLES', 'OBS_INDEL']
-            col_pi = ['Pi_SUM', 'Pi_SUM', 'Pi_INDEL']
+            col_obs = ['OBS_SNV', 'OBS_SAMPLES']
+            col_pi = ['Pi_SUM', 'Pi_SUM']
             col_size = 'ELT_SIZE'
+        cols_mt = ['SNV', 'SNV_SAMPLE']
+        if 'EXP_INDEL' in dfi.columns:
+            col_obs += ['OBS_INDEL']
+            col_pi += ['Pi_INDEL']
+            cols_mt += ['INDEL', 'MUT']
+        else:
+            for key in list(mut_type.keys()):
+                if 'indel' in key.lower():
+                    del mut_type[key]
+
+        cols_mt_set.update(cols_mt)
 
         genes_in_coding = dfi.index[dfi.index.isin(df_comb.index)]
         dfi_comp = dfi.loc[genes_in_coding]
         df_comb.loc[genes_in_coding, 'SIZE_' + result_type] = dfi_comp[col_size].to_numpy().copy()
 
-        for j, mt in enumerate(['SNV', 'SNV_SAMPLE', 'INDEL']):
+        for j, mt in enumerate(cols_mt[:3]):
 
             if mt == 'INDEL':
                 pfx_at = '_INDEL'
@@ -173,29 +184,29 @@ def generate_dig_report(
                 dfi_comp['ALPHA' + pfx_at],
                 1 / (dfi_comp['THETA' + pfx_at] * dfi_comp[col_pi[j]] + 1)
             )
-
-        # combining p-values with Fisher's method
-        col_i = 'PVAL_' + result_type + '_' + 'MUT'
-        df_comb[col_i + '_recalc'] = np.nan
-        df_comb[col_i + '_unif'] = np.nan
-        df_comb[col_i + '_lower'] = np.nan
-        df_comb[col_i + '_upper'] = np.nan
-        for idx in df_comb.index:
-            df_comb.at[idx, col_i + '_recalc'] = sp.stats.combine_pvalues(
-                [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_recalc'],
-                 df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_recalc']], method='fisher')[1]
-            df_comb.at[idx, col_i + '_unif'] = sp.stats.combine_pvalues(
-                [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_unif'],
-                 df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_unif']], method='fisher')[1]
-            df_comb.at[idx, col_i + '_lower'] = sp.stats.combine_pvalues(
-                [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_lower'],
-                 df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_lower']], method='fisher')[1]
-            df_comb.at[idx, col_i + '_upper'] = sp.stats.combine_pvalues(
-                [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_upper'],
-                 df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_upper']], method='fisher')[1]
+        if 'EXP_INDEL' in dfi.columns:
+            # combining p-values with Fisher's method
+            col_i = 'PVAL_' + result_type + '_' + 'MUT'
+            df_comb[col_i + '_recalc'] = np.nan
+            df_comb[col_i + '_unif'] = np.nan
+            df_comb[col_i + '_lower'] = np.nan
+            df_comb[col_i + '_upper'] = np.nan
+            for idx in df_comb.index:
+                df_comb.at[idx, col_i + '_recalc'] = sp.stats.combine_pvalues(
+                    [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_recalc'],
+                     df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_recalc']], method='fisher')[1]
+                df_comb.at[idx, col_i + '_unif'] = sp.stats.combine_pvalues(
+                    [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_unif'],
+                     df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_unif']], method='fisher')[1]
+                df_comb.at[idx, col_i + '_lower'] = sp.stats.combine_pvalues(
+                    [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_lower'],
+                     df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_lower']], method='fisher')[1]
+                df_comb.at[idx, col_i + '_upper'] = sp.stats.combine_pvalues(
+                    [df_comb.at[idx, 'PVAL_' + result_type + '_SNV_upper'],
+                     df_comb.at[idx, 'PVAL_' + result_type + '_INDEL_upper']], method='fisher')[1]
 
     # combining p-values across region types
-    for mt in ['SNV', 'SNV_SAMPLE', 'INDEL', 'MUT']:
+    for mt in list(cols_mt_set):
         for typ in ['recalc', 'unif', 'lower', 'upper']:
             for idx in df_comb.index:
                 df_comb.at[idx, 'PVAL_' + mt + '_' + typ] = sp.stats.combine_pvalues(
diff --git a/generate_dig_report_noncoding.py b/generate_dig_report_noncoding.py
index 9cd155a..a3ea8d4 100644
--- a/generate_dig_report_noncoding.py
+++ b/generate_dig_report_noncoding.py
@@ -115,14 +115,23 @@ def generate_dig_report(path_to_dig_results, dir_output, cgc_list_path, pancan_l
     # Adding indicator of genes being part of the CGC or PanCan list
     df['CGC'] = df['GENE'].isin(cgc_list)
     df['PANCAN'] = df['GENE'].isin(pancan_list)
-    # Adding new columns for Non-synonymous SNVs + Indels
-    df['OBS_MUT'] = df['OBS_SNV'] + df['OBS_INDEL']
-    df['EXP_MUT'] = df['EXP_SNV'] + df['EXP_INDEL']
-    # Computing lower and upper bounds for the p-values
-    pfxs_obs = ['SNV', 'INDEL', 'SAMPLES', 'MUT']
-    pfxs_pval = ['SNV', 'INDEL', 'SAMPLE', 'MUT']
-    pfxs_pi = ['SUM', 'INDEL', 'SUM', 'MUT']
-    pfxs_at = ['', '_INDEL', '', '', '']
+    if 'EXP_INDEL' in df.columns:
+        # Adding new columns for Non-synonymous SNVs + Indels
+        df['OBS_MUT'] = df['OBS_SNV'] + df['OBS_INDEL']
+        df['EXP_MUT'] = df['EXP_SNV'] + df['EXP_INDEL']
+        # Computing lower and upper bounds for the p-values
+        pfxs_obs = ['SNV', 'INDEL', 'SAMPLES', 'MUT']
+        pfxs_pval = ['SNV', 'INDEL', 'SAMPLE', 'MUT']
+        pfxs_pi = ['SUM', 'INDEL', 'SUM', 'MUT']
+        pfxs_at = ['', '_INDEL', '', '', '']
+    else:
+        for key in list(mut_type.keys()):
+            if 'indel' in key.lower():
+                del mut_type[key]
+        pfxs_obs = ['SNV', 'SAMPLES']
+        pfxs_pval = ['SNV', 'SAMPLE']
+        pfxs_pi = ['SUM', 'SUM']
+        pfxs_at = ['', '']
 
     for i in range(len(pfxs_obs)):
         if pfxs_obs[i] == 'MUT':
diff --git a/run.py b/run.py
index 44a588f..d97f67f 100644
--- a/run.py
+++ b/run.py
@@ -3,8 +3,8 @@
 import generate_dig_report_noncoding
 import generate_dig_report_combined
 
-cgc_list_path = 'gs://getzlab-workflows-reference_files-oa/hg38/dig/cancer_gene_census_2024_06_20.tsv'
-pancan_list_path = 'gs://getzlab-workflows-reference_files-oa/hg38/dig/pancanatlas_genes.tsv'
+cgc_list_path = './cancer_gene_census_2024_06_20.tsv'
+pancan_list_path = './pancanatlas_genes.tsv'
 
 # noncoding regions
 generate_dig_report_noncoding.generate_dig_report(
diff --git a/train_mutation_map.ipynb b/train_mutation_map.ipynb
index 8852bbb..2fc3e3e 100644
--- a/train_mutation_map.ipynb
+++ b/train_mutation_map.ipynb
@@ -564,7 +564,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": null,
    "id": "fa0b0e9c-df8f-4222-9e89-cd00757af562",
    "metadata": {},
    "outputs": [
@@ -572,148 +572,73 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "[20241009-01:40:30] [prefect] Starting Slurm controller ...\n",
-      "[20241009-01:40:30] [prefect] Waiting up to 60 seconds for Slurm controller to start ...\n",
-      "[20241009-01:40:30] [prefect] Started Slurm controller.\n",
-      "[20241009-01:40:30] [prefect] Workflow results disk low on space (22 GB remaining)\n",
-      "[20241009-01:40:30] [prefect] Enqueued workflow DIG_burden_test\n",
-      "[20241009-01:40:30] [DIG_burden_test:DIG_convert_maf] Hashing file TCGA_WGS_UVM.maf; 100/190 MiB completed\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_tracks] Job avoidance disabled for this task; overwriting output.\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_tracks] Localizing inputs...\n",
-      "[20241009-01:40:32] [DIG_burden_test:DIG_convert_maf] Localizing inputs...\n",
-      "[20241009-01:40:32] [DIG_burden_test:DIG_convert_maf] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_convert_maf__2024-10-08--14-33-09_mblxxey_s2nsq0q_cvilttyadla1u\n",
-      "[20241009-01:40:32] [DIG_burden_test:DIG_convert_maf] 1/1 jobs avoided\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_tracks] Disk name is canine-a88d8673c93a0607e747fcb58805de1e\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_ref_fasta] Job avoidance disabled for this task; overwriting output.\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_ref_fasta] Localizing inputs...\n",
-      "[20241009-01:40:32] [DIG_burden_test:Localize_ref_fasta] Disk name is canine-5714e9942090819a76b081ec3fd090aa\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_ref_fasta] Found existing disk canine-5714e9942090819a76b081ec3fd090aa\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_ref_fasta] Task staged in /mnt/nfs/workspace/DIG_burden_test/Localize_ref_fasta__2024-10-08--14-33-09_mg4xwxy_tbhx1ki_ykhip0lgm0pxq\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_tracks] Found existing disk canine-a88d8673c93a0607e747fcb58805de1e\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_tracks] Task staged in /mnt/nfs/workspace/DIG_burden_test/Localize_tracks__2024-10-08--14-33-09_mg4xwxy_tbhx1ki_urlzoh5t1wzrw\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_ref_fasta] 1 job submitted.\n",
-      "[20241009-01:40:33] [DIG_burden_test:Localize_tracks] 1 job submitted.\n",
-      "[20241009-01:42:03] [DIG_burden_test:Localize_ref_fasta] Finished with status COMPLETED\n",
-      "[20241009-01:42:03] [DIG_burden_test:Localize_tracks] Finished with status COMPLETED\n",
-      "[20241009-01:42:03] [DIG_burden_test:DIG_annotate_maf] Localizing inputs...\n",
-      "[20241009-01:42:03] [DIG_burden_test:DIG_annotate_maf] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_annotate_maf__2024-10-08--14-37-41_exnnusq_s2nsq0q_o35wynerh5vvo\n",
-      "[20241009-01:42:04] [DIG_burden_test:DIG_annotate_maf] 1/1 jobs avoided\n",
-      "[20241009-01:42:04] [DIG_burden_test:DIG_unzip_h5] Localizing inputs...\n",
-      "[20241009-01:42:04] [DIG_burden_test:DIG_unzip_h5] Found existing disk canine-scratch-tracks-0\n",
-      "[20241009-01:42:04] [DIG_burden_test:DIG_unzip_h5] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_unzip_h5__2024-10-08--14-43-44_iui3eoy_s2nsq0q_3jhzsqsvabgqw\n",
-      "[20241009-01:42:04] [DIG_burden_test:DIG_unzip_h5] 1 job submitted.\n",
-      "[20241009-01:44:35] [DIG_burden_test:DIG_unzip_h5] Finished with status COMPLETED\n",
-      "[20241009-01:44:35] [DIG_burden_test:DIG_add_objectives] Localizing inputs...\n",
-      "[20241009-01:44:35] [DIG_burden_test:DIG_add_objectives] Found existing disk canine-scratch-tracks-with-objectives-tcga-wgs-uvm-0\n",
-      "[20241009-01:44:35] [DIG_burden_test:DIG_add_objectives] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_add_objectives__2024-10-08--16-03-18_vave3cy_s2nsq0q_for2pvrvuagyw\n",
-      "[20241009-01:44:35] [DIG_burden_test:DIG_add_objectives] 1 job submitted.\n",
-      "[20241009-01:45:05] [DIG_burden_test:DIG_add_objectives] Finished with status COMPLETED\n",
-      "[20241009-01:45:05] [DIG_burden_test:DIG_run_kfold_training] Localizing inputs...\n",
-      "[20241009-01:45:05] [DIG_burden_test:DIG_run_kfold_training] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_run_kfold_training__2024-10-08--17-15-49_wlngc2q_exikiti_jyycnxxv4capq\n",
-      "[20241009-01:45:06] [DIG_burden_test:DIG_run_kfold_training] 1/1 jobs avoided\n",
-      "[20241009-01:45:06] [DIG_burden_test:DIG_pretrain_region] Localizing inputs...\n",
-      "[20241009-01:45:06] [DIG_burden_test:DIG_pretrain_region] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_pretrain_region__2024-10-09--01-45-06_htcoyhi_s2nsq0q_bol444355s1tq\n",
-      "[20241009-01:45:06] [DIG_burden_test:DIG_pretrain_region] 1 job submitted.\n",
-      "[20241009-01:47:07] [DIG_burden_test:DIG_pretrain_region] Finished with status COMPLETED\n",
-      "[20241009-01:47:07] [DIG_burden_test:DIG_pretrain_sequence] Localizing inputs...\n",
-      "[20241009-01:47:07] [DIG_burden_test:DIG_pretrain_sequence] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_pretrain_sequence__2024-10-09--01-47-07_o0g1b3q_s2nsq0q_iavhpxnlwlyng\n",
-      "[20241009-01:47:07] [DIG_burden_test:DIG_pretrain_sequence] 1 job submitted.\n",
-      "[20241009-01:47:37] [DIG_burden_test:DIG_pretrain_sequence] Finished with status COMPLETED\n",
-      "[20241009-01:47:38] [DIG_burden_test:DIG_pretrain_genic] Localizing inputs...\n",
-      "[20241009-01:47:38] [DIG_burden_test:DIG_pretrain_genic] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_pretrain_genic__2024-10-09--01-47-38_155ewla_s2nsq0q_i3j01fj3tov0m\n",
-      "[20241009-01:47:38] [DIG_burden_test:DIG_pretrain_genic] 1 job submitted.\n",
-      "[20241009-01:48:38] [DIG_burden_test:DIG_pretrain_genic] Finished with status COMPLETED\n",
-      "[20241009-01:48:38] [DIG_burden_test:DIG_test_coding] Localizing inputs...\n",
-      "[20241009-01:48:38] [DIG_burden_test:DIG_test_coding] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_test_coding__2024-10-09--01-48-38_ajn1isa_s2nsq0q_xxcmtgiacwhfc\n",
-      "[20241009-01:48:39] [DIG_burden_test:DIG_test_coding] 1 job submitted.\n",
-      "[20241009-01:48:39] [DIG_burden_test:DIG_preprocess_element_model] Localizing inputs...\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "Copying gs://getzlab-workflows-reference_files-oa/hg38/dig/element_data.h5...\n",
-      "\\ [1 files][144.0 MiB/144.0 MiB]                                                \n",
-      "Operation completed over 1 objects/144.0 MiB.                                    \n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "[20241009-01:48:42] [DIG_burden_test:DIG_preprocess_element_model] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_preprocess_element_model__2024-10-09--01-48-39_42iihta_s2nsq0q_lv1fqminjd15o\n",
-      "[20241009-01:48:42] [DIG_burden_test:DIG_preprocess_element_model] 3 jobs submitted.\n",
-      "[20241009-01:49:09] [DIG_burden_test:DIG_test_coding] Finished with status COMPLETED\n",
-      "[20241009-01:49:09] [DIG_burden_test:DIG_report_coding] Localizing inputs...\n",
-      "[20241009-01:49:09] [DIG_burden_test:DIG_report_coding] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_report_coding__2024-10-09--01-49-09_2duowki_s2nsq0q_5pfx3cxg1ngke\n",
-      "[20241009-01:49:09] [DIG_burden_test:DIG_report_coding] 1 job submitted.\n",
-      "[20241009-01:50:40] [DIG_burden_test:DIG_report_coding] Finished with status COMPLETED\n",
-      "[20241009-01:59:47] [DIG_burden_test:DIG_preprocess_element_model] Finished with statuses COMPLETED: 3\n",
-      "[20241009-01:59:47] [DIG_burden_test:DIG_element_model] Localizing inputs...\n",
-      "[20241009-01:59:48] [DIG_burden_test:DIG_element_model] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_element_model__2024-10-09--01-59-47_ovsqvjy_s2nsq0q_zklufhcrwoanq\n",
-      "[20241009-01:59:48] [DIG_burden_test:DIG_element_model] 3 jobs submitted.\n",
-      "[20241009-02:00:18] [DIG_burden_test:DIG_element_model] Finished with statuses COMPLETED: 3\n",
-      "[20241009-02:00:18] [DIG_burden_test:DIG_test_noncoding] Localizing inputs...\n",
-      "[20241009-02:00:18] [DIG_burden_test:DIG_test_noncoding] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_test_noncoding__2024-10-09--02-00-18_nocgzsq_s2nsq0q_ixy3dknf03ii4\n",
-      "[20241009-02:00:19] [DIG_burden_test:DIG_test_noncoding] 3 jobs submitted.\n",
-      "[20241009-02:00:49] [DIG_burden_test:DIG_test_noncoding] Finished with statuses COMPLETED: 3\n",
-      "[20241009-02:00:49] [DIG_burden_test:Gather_noncoding] Localizing inputs...\n",
-      "[20241009-02:00:49] [DIG_burden_test:Gather_noncoding] Task staged in /mnt/nfs/workspace/DIG_burden_test/Gather_noncoding__2024-10-09--02-00-49_klkqtpy_tbhx1ki_dge4sulp1yeem\n",
-      "[20241009-02:00:49] [DIG_burden_test:DIG_report_noncoding] Localizing inputs...\n",
-      "[20241009-02:00:49] [DIG_burden_test:Gather_noncoding] 1 job submitted.\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "Copying gs://getzlab-workflows-reference_files-oa/hg38/dig/cancer_gene_census_2024_06_20.tsv...\n",
-      "/ [1 files][  4.2 KiB/  4.2 KiB]                                                \n",
-      "Operation completed over 1 objects/4.2 KiB.                                      \n",
-      "Copying gs://getzlab-workflows-reference_files-oa/hg38/dig/pancanatlas_genes.tsv...\n",
-      "/ [1 files][  1.7 KiB/  1.7 KiB]                                                \n",
-      "Operation completed over 1 objects/1.7 KiB.                                      \n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "[20241009-02:00:53] [DIG_burden_test:DIG_report_noncoding] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_report_noncoding__2024-10-09--02-00-49_zkrm2ga_s2nsq0q_uwmb5ewgrv1r2\n",
-      "[20241009-02:00:53] [DIG_burden_test:DIG_report_noncoding] 3 jobs submitted.\n",
-      "[20241009-02:01:19] [DIG_burden_test:Gather_noncoding] Finished with status COMPLETED\n",
-      "[20241009-02:01:53] [DIG_burden_test:DIG_report_noncoding] Finished with statuses COMPLETED: 3\n",
-      "[20241009-02:01:53] [DIG_burden_test:Gather_noncoding] Localizing inputs...\n",
-      "[20241009-02:01:53] [DIG_burden_test:Gather_noncoding] Task staged in /mnt/nfs/workspace/DIG_burden_test/Gather_noncoding__2024-10-09--02-01-53_klkqtpy_tbhx1ki_az2aysxyy2csk\n",
-      "[20241009-02:01:53] [DIG_burden_test:Gather_noncoding] 1 job submitted.\n",
-      "[20241009-02:02:24] [DIG_burden_test:Gather_noncoding] Finished with status COMPLETED\n",
-      "[20241009-02:02:24] [DIG_burden_test:DIG_results] Localizing inputs...\n",
-      "[20241009-02:02:24] [DIG_burden_test:DIG_results] Task staged in /mnt/nfs/workspace/DIG_burden_test/DIG_results__2024-10-09--02-02-24_zs5sfpy_s2nsq0q_eghfiueojworg\n",
-      "[20241009-02:02:24] [DIG_burden_test:DIG_results] 1 job submitted.\n",
-      "[20241009-02:05:25] [DIG_burden_test:DIG_results] Finished with status COMPLETED\n",
-      "[20241009-02:05:26] [prefect] Collated results from workflow DIG_burden_test\n"
+      "[20241009-16:02:43] [prefect] Starting Slurm controller ...\n",
+      "[20241009-16:02:43] [prefect] Waiting up to 60 seconds for Slurm controller to start ...\n",
+      "[20241009-16:02:56] [prefect] Started Slurm controller.\n",
+      "[20241009-16:02:56] [prefect] Workflow results disk low on space (26 GB remaining)\n",
+      "[20241009-16:03:02] [prefect] Enqueued workflow uvm_tcga_dig\n",
+      "[20241009-16:03:03] [uvm_tcga_dig:DIG_convert_maf] Hashing file TCGA_WGS_UVM.maf; 100/190 MiB completed\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:DIG_convert_maf] Localizing inputs...\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_tracks] Job avoidance disabled for this task; overwriting output.\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_tracks] Localizing inputs...\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_ref_fasta] Job avoidance disabled for this task; overwriting output.\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_ref_fasta] Localizing inputs...\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_tracks] Disk name is canine-a88d8673c93a0607e747fcb58805de1e\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:DIG_convert_maf] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DIG_convert_maf__2024-10-09--16-03-04_mblxxey_s2nsq0q_cvilttyadla1u\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:Localize_ref_fasta] Disk name is canine-5714e9942090819a76b081ec3fd090aa\n",
+      "[20241009-16:03:04] [uvm_tcga_dig:DIG_convert_maf] 1 job submitted.\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_tracks] Creating new persistent disk canine-a88d8673c93a0607e747fcb58805de1e\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_tracks] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/Localize_tracks__2024-10-09--16-03-04_mg4xwxy_tbhx1ki_urlzoh5t1wzrw\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_ref_fasta] Creating new persistent disk canine-5714e9942090819a76b081ec3fd090aa\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_ref_fasta] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/Localize_ref_fasta__2024-10-09--16-03-04_mg4xwxy_tbhx1ki_ykhip0lgm0pxq\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_tracks] 1 job submitted.\n",
+      "[20241009-16:03:05] [uvm_tcga_dig:Localize_ref_fasta] 1 job submitted.\n",
+      "[20241009-16:07:07] [uvm_tcga_dig:Localize_ref_fasta] Finished with status COMPLETED\n",
+      "[20241009-16:08:06] [uvm_tcga_dig:DIG_convert_maf] Finished with status COMPLETED\n",
+      "[20241009-16:08:06] [uvm_tcga_dig:DIG_annotate_maf] Localizing inputs...\n",
+      "[20241009-16:08:06] [uvm_tcga_dig:DIG_annotate_maf] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DIG_annotate_maf__2024-10-09--16-08-06_exnnusq_s2nsq0q_o35wynerh5vvo\n",
+      "[20241009-16:08:06] [uvm_tcga_dig:DIG_annotate_maf] 1 job submitted.\n",
+      "[20241009-16:09:37] [uvm_tcga_dig:DIG_annotate_maf] Finished with status COMPLETED\n",
+      "[20241009-16:13:39] [uvm_tcga_dig:Localize_tracks] Finished with status COMPLETED\n",
+      "[20241009-16:13:39] [uvm_tcga_dig:DIG_unzip_h5] Localizing inputs...\n",
+      "[20241009-16:13:39] [uvm_tcga_dig:DIG_unzip_h5] Creating new persistent disk canine-scratch-tracks-0\n",
+      "[20241009-16:13:39] [uvm_tcga_dig:DIG_unzip_h5] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DIG_unzip_h5__2024-10-09--16-13-39_iui3eoy_s2nsq0q_3jhzsqsvabgqw\n",
+      "[20241009-16:13:40] [uvm_tcga_dig:DIG_unzip_h5] 1 job submitted.\n",
+      "[20241009-17:44:47] [uvm_tcga_dig:DIG_unzip_h5] Finished with status COMPLETED\n",
+      "[20241009-17:44:47] [uvm_tcga_dig:DIG_add_objectives] Localizing inputs...\n",
+      "[20241009-17:44:48] [uvm_tcga_dig:DIG_add_objectives] Creating new persistent disk canine-scratch-tracks-with-objectives-tcga-wgs-uvm-0\n",
+      "[20241009-17:44:48] [uvm_tcga_dig:DIG_add_objectives] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DIG_add_objectives__2024-10-09--17-44-47_vave3cy_s2nsq0q_for2pvrvuagyw\n",
+      "[20241009-17:44:48] [uvm_tcga_dig:DIG_add_objectives] 1 job submitted.\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DIG_add_objectives] Finished with status COMPLETED\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DeleteDisk] Job avoidance disabled for this task; overwriting output.\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DeleteDisk] Localizing inputs...\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DeleteDisk] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DeleteDisk__2024-10-09--18-59-49_ask2hla_tbhx1ki_zdxl4tedwdsyu\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DIG_run_kfold_training] Localizing inputs...\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DIG_run_kfold_training] Task staged in /mnt/nfs/workspace/uvm_tcga_dig/DIG_run_kfold_training__2024-10-09--18-59-49_wlngc2q_exikiti_jyycnxxv4capq\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DeleteDisk] 1 job submitted.\n",
+      "[20241009-18:59:49] [uvm_tcga_dig:DIG_run_kfold_training] 1 job submitted.\n",
+      "[20241009-19:01:50] [uvm_tcga_dig:DeleteDisk] Finished with status COMPLETED\n"
      ]
     }
    ],
    "source": [
     "with wolf.Workflow(workflow = dig_workflow) as w:\n",
     "    w.run(\n",
-    "        maf_file = 'TCGA_WGS_UVM.maf', # MAF from characterization pipeline        \n",
-    "        interval_set_name = [\n",
+    "        maf_file = 'DLBCL_WGS_UVM_hg38.maf', # MAF from characterization pipeline        \n",
+    "        genewise_interval_set_name = [\n",
     "            \"promoters\",\n",
     "            \"3-prime_UTRs\",\n",
     "            \"5-prime_UTRs\"\n",
     "        ], # the first 3 interval sets must remain these, and in this order, additional sets can be added \n",
-    "        interval_set_bed = [\n",
-    "            \"gs://getzlab-workflows-reference_files-oa/hg38/dig/gc19_pc.prom.bed\",\n",
-    "            \"gs://getzlab-workflows-reference_files-oa/hg38/dig/gc19_pc.3utr.bed\",\n",
-    "            \"gs://getzlab-workflows-reference_files-oa/hg38/dig/gc19_pc.5utr.bed\"\n",
+    "        genewise_interval_set_bed = [\n",
+    "            \"gs://getzlab-workflows-reference_files-oa/hg19/dig/gc19_pc.prom.bed\",\n",
+    "            \"gs://getzlab-workflows-reference_files-oa/hg19/dig/gc19_pc.3utr.bed\",\n",
+    "            \"gs://getzlab-workflows-reference_files-oa/hg19/dig/gc19_pc.5utr.bed\"\n",
     "        ], # must be consistent with list above\n",
     "        # mutation_map = \"https://cb.csail.mit.edu/DIG/downloads/mutation_maps/Kidney-RCC_SNV_MNV_INDEL.Pretrained.h5\", # mutation map trained for the analyzed cohort\n",
     "        ref_build = \"hg38\", # reference genome for MAF file\n",
-    "        RUN_NAME = \"DIG_burden_test\"\n",
-    "    )           "
+    "        RUN_NAME = \"dlbcl_wgs\"\n",
+    "    )"
    ]
   }
  ],
@@ -733,7 +658,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.19"
+   "version": "3.10.8"
   }
  },
  "nbformat": 4,