pyproject.toml

[tool.poetry]
name = "my28brains"
version = "0.1.0"
description = "Brain Shape Analysis through the Menstrual Cycle"
authors = ["Adele Myers <adele@ucsb.edu>"]
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.11"
geomstats = { git = "https://github.com/geomstats/geomstats.git" }
joblib = "*"
matplotlib = "*"
nibabel = "*"
nilearn = "*"
open3d = "*"
pykeops = "*"
plotly = "*"
psutil = "*"
requests = "*"
rtree = "*"
scikit-image = "*"
trimesh = "*"
wandb = "*"
jupyter = "*"
pandas = "*"
jupyterlab = "*"
pytest = "*"
jupyterlab-code-formatter = "*"
pre-commit = "*"
black = "*"
flake8 = "*"
flake8-docstrings = "*"
Flake8-pyproject = "*"
isort = "*"
pyvista = "^0.43.3"
dash = "^2.15.0"
addict = "*"
tqdm = "^4.66.2"
statsmodels = "^0.14.1"
islp = "^0.3.22"
dash-bootstrap-components = "^1.5.0"
neuraloperator = {git = "https://github.com/neuraloperator/neuraloperator.git"}
torch-harmonics = "^0.6.5"

[tool.flake8]
application_import_names = "my28brains"
docstring-convention = "numpy"
import_order_style = "smarkets"
max-line-length = 88
extend-exclude = [".venv"]
extend-ignore = ["E501", "F401", "E203"]
per-file-ignores = [
    "*/__init__.py: F401,F403,D104"
]

[tool.isort]
multi_line_output = 3
include_trailing_comma = true
skip = [".gitignore", ".venv"]


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

packages = [
    { include = "src" },
    { include = "project_menstrual" },
    { include = "project_pregnancy" },
    { include = "project_regression" },
]