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update with tutorials re-pathed to master
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neworderofjamie committed Apr 22, 2024
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2 changes: 1 addition & 1 deletion documentation/5/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 36093133ad98279596a55ee3a349513e
config: e0280842fb3238285b6e0890a2fa3ab4
tags: 645f666f9bcd5a90fca523b33c5a78b7
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.12"
"version": "3.11.5"
}
},
"nbformat": 4,
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.12"
"version": "3.11.5"
}
},
"nbformat": 4,
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.12"
"version": "3.11.5"
}
},
"nbformat": 4,
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20 changes: 10 additions & 10 deletions documentation/5/_sources/tutorials/index.rst.txt
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Expand Up @@ -16,7 +16,7 @@ Create a model consisting of a population of Izhikevich neurons with heterogeneo
comp_neuro_101/1_neurons.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/comp_neuro_101/1_neurons.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/comp_neuro_101/1_neurons.ipynb

Synapses
--------
Expand All @@ -28,7 +28,7 @@ Create a simple balanced random network with two, sparsely connected populations
comp_neuro_101/2_synapses.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/comp_neuro_101/2_synapses.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/comp_neuro_101/2_synapses.ipynb

MNIST inference
===============
Expand All @@ -44,7 +44,7 @@ Create a simple three layer network of integrate-and-fire neurons, densely conne
mnist_inference/tutorial_1.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mnist_inference/tutorial_1.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mnist_inference/tutorial_1.ipynb

Classifying entire test set
---------------------------
Expand All @@ -56,7 +56,7 @@ Present entire MNIST test set to previous model and calculate accuracy.
mnist_inference/tutorial_2.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mnist_inference/tutorial_2.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mnist_inference/tutorial_2.ipynb


Improve classification performance
Expand All @@ -69,7 +69,7 @@ Use parallel batching and custom updates to improve inference performance by ove
mnist_inference/tutorial_3.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mnist_inference/tutorial_3.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mnist_inference/tutorial_3.ipynb

Insect-inspired MNIST classification
====================================
Expand All @@ -85,7 +85,7 @@ Create the first layer of *Projection Neurons* which convert input images into a
mushroom_body/1_first_layer.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mushroom_body/1_first_layer.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mushroom_body/1_first_layer.ipynb

Kenyon Cells
------------
Expand All @@ -97,7 +97,7 @@ Add a second, randomly-connected layer of *Kenyon Cells* to the model.
mushroom_body/2_second_layer.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mushroom_body/2_second_layer.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mushroom_body/2_second_layer.ipynb

Kenyon Cell gain control
------------------------
Expand All @@ -109,7 +109,7 @@ Add recurrent inhibition circuit, inspired by <i>Giant GABAergic Neuron</i> in l
mushroom_body/3_second_layer_gain_control.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mushroom_body/3_second_layer_gain_control.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mushroom_body/3_second_layer_gain_control.ipynb

Mushroom Body Output Neurons
----------------------------
Expand All @@ -121,7 +121,7 @@ Add *Mushroom Body Output Neurons* with STDP learning and train model on MNIST t
mushroom_body/4_third_layer.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mushroom_body/4_third_layer.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mushroom_body/4_third_layer.ipynb

Testing
-------
Expand All @@ -133,4 +133,4 @@ Create a simplified copy of the model without learning, load in the trained weig
mushroom_body/5_testing.ipynb

.. image:: https://colab.research.google.com/assets/colab-badge.svg
:target: https://colab.research.google.com/github/genn-team/genn/blob/genn_5/docs/tutorials/mushroom_body/5_testing.ipynb
:target: https://colab.research.google.com/github/genn-team/genn/blob/master/docs/tutorials/mushroom_body/5_testing.ipynb
17 changes: 14 additions & 3 deletions documentation/5/_static/_sphinx_javascript_frameworks_compat.js
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@@ -1,9 +1,20 @@
/* Compatability shim for jQuery and underscores.js.
/*
* _sphinx_javascript_frameworks_compat.js
* ~~~~~~~~~~
*
* Compatability shim for jQuery and underscores.js.
*
* WILL BE REMOVED IN Sphinx 6.0
* xref RemovedInSphinx60Warning
*
* Copyright Sphinx contributors
* Released under the two clause BSD licence
*/

/**
* select a different prefix for underscore
*/
$u = _.noConflict();


/**
* small helper function to urldecode strings
*
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51 changes: 30 additions & 21 deletions documentation/5/_static/basic.css
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*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
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p.sidebar-title {
font-weight: bold;
}

nav.contents,
aside.topic,

div.admonition, div.topic, blockquote {
clear: left;
}

/* -- topics ---------------------------------------------------------------- */

nav.contents,
aside.topic,

div.topic {
border: 1px solid #ccc;
padding: 7px;
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aside.sidebar > :last-child,
nav.contents > :last-child,
aside.topic > :last-child,

div.topic > :last-child,
div.admonition > :last-child {
margin-bottom: 0;
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aside.sidebar::after,
nav.contents::after,
aside.topic::after,

div.topic::after,
div.admonition::after,
blockquote::after {
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margin-bottom: 0;
}

/* Docutils 0.17 and older (footnotes & citations) */
dl.footnote > dt,
dl.citation > dt {
float: left;
margin-right: 0.5em;
}

dl.footnote > dd,
dl.citation > dd {
margin-bottom: 0em;
}

dl.footnote > dd:after,
dl.citation > dd:after {
content: "";
clear: both;
}

/* Docutils 0.18+ (footnotes & citations) */
aside.footnote > span,
div.citation > span {
float: left;
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clear: both;
}

/* Footnotes & citations ends */

dl.field-list {
display: grid;
grid-template-columns: fit-content(30%) auto;
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padding-right: 5px;
}

dl.field-list > dt:after {
content: ":";
}

dl.field-list > dd {
padding-left: 0.5em;
margin-top: 0em;
Expand All @@ -670,16 +697,6 @@ dd {
margin-left: 30px;
}

.sig dd {
margin-top: 0px;
margin-bottom: 0px;
}

.sig dl {
margin-top: 0px;
margin-bottom: 0px;
}

dl > dd:last-child,
dl > dd:last-child > :last-child {
margin-bottom: 0;
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cursor: help;
}

.translated {
background-color: rgba(207, 255, 207, 0.2)
}

.untranslated {
background-color: rgba(255, 207, 207, 0.2)
}

/* -- code displays --------------------------------------------------------- */

pre {
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