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Update default memory and cpu count
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tmtabor authored Dec 18, 2024
1 parent eb55264 commit ee1966f
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion manifest
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,8 @@ author=Thorin Tabor;UCSD - Mesirov Lab
categories=spatial transcriptomics
commandLine=Rscript /spatialGE/wrapper.R -f <input.file> -g <gene.sets.database> -p <permutations> -r <random.seed> -s <minimum.spots> -m <minimum.genes> -d <standard.deviations> -w <filter.p.values> -i <filter.gene.proportion>
job.docker.image=genepattern/spatialge-stenrich:0.4
job.cpuCount=7
job.memory=4Gb
src.repo=https://github.com/genepattern/spatialGE.STenrich
cpuType=any
description=Detect genes showing spatial expression patterns (e.g., hotspots). Tests if spots/cells with high average expression of a gene set shows evidence of spatial aggregation.
Expand Down Expand Up @@ -147,4 +149,4 @@ quality=development
taskDoc=
taskType=spatial transcriptomics
userid=tabor
version=Write stlist rds to disk
version=Write stlist rds to disk

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