diff --git a/Single-Cell RNA-seq Clustering Analysis Notebook.ipynb b/Single-Cell RNA-seq Clustering Analysis Notebook.ipynb
index 04fffd7..117aa58 100644
--- a/Single-Cell RNA-seq Clustering Analysis Notebook.ipynb
+++ b/Single-Cell RNA-seq Clustering Analysis Notebook.ipynb
@@ -20,19 +20,19 @@
"\n",
"### Analysis Overview\n",
"\n",
- "1. **Setup Analysis**\n",
+ "1. [**Setup Analysis**](#Step-1:-Setup-Analysis)\n",
" 1. Load raw count matrix.\n",
- "2. **Preprocess Counts**\n",
+ "2. [**Preprocess Counts**](#Step-2:-Preprocess-Counts)\n",
" 1. Filter cells based on QC metrics.\n",
" 2. Perform data normalization and scaling.\n",
" 3. Remove unwanted sources of variation (number of detected molecules per cell as well as the percentage mitochondrial gene content).\n",
" 4. Detect highly variable genes.\n",
" 5. Perform linear dimensional reduction (PCA).\n",
- "3. **Cluster Cells**\n",
+ "3. [**Cluster Cells**](#Step-3:-Cluster-Cells)\n",
" 1. Cluster cells (graph-based clustering) in PCA space and visualize using t-SNE.\n",
- "4. **Visualize Cluster Markers**\n",
+ "4. [**Visualize Cluster Markers**](#Step-4:-Visualize-Cluster-Markers)\n",
" 1. Explore and visualize cluster markers interactively.\n",
- "5. **Export Analysis Data**\n",
+ "5. [**Export Analysis Data**](#Step-5:-Export-Analysis-Data)\n",
" 1. Export data to `.csv` files or a compressed `.h5ad` format."
]
},
diff --git a/__init__.py b/__init__.py
new file mode 100644
index 0000000..e69de29