vars.yaml

---
###############
# Point stage_dir to a different locatiom. By default it will reside in the current directory.
##############
stage_dir: "{{ lookup('env', 'PWD') }}/stage_dir"

########
###############
# staged_repos are cloned and deployed under stage_dir
##############
staged_repos:
   noctua-form: master
   noctua-landing-page: master
   noctua-models: master
   go-site: master
   noctua-visual-pathway-editor: master
   noctua-alliance-pathway-preview: master

################
# minerva JAVA_OPTS 
##############
minerva_java_opts: "-Xmx4G"

######
# Golr Index
PROD_MODE: 0 
#####
#
# 
USE_CLOUDFLARE: 0

###############
# Barista Local Authentication.
##############
uri: 'http://orcid.org/XXXX-XXXX-XXXX-XXXX'
username: REPLACE_ME 
password: REPLACE_ME 

###
# Barista Lookup URL
# http://{{ barista_lookup_host }}:{{ barista_proxy_port }}
# The port should be available on host machine
#####
host: REPLACE_ME
barista_lookup_host: "{{ host }}"
barista_lookup_host_alias: "{{ barista_lookup_host }}"
barista_proxy_port: 8090
barista_protocol: http
barista_lookup_url: '{{ barista_protocol }}://{{ barista_lookup_host }}:{{ barista_proxy_port }}'

###
# Noctua Access Port from Browser
# http://{{ noctua_host }}:{{ noctua_proxy_port }}
# The port should be available on host machine
#####
noctua_host: "{{ host }}"
noctua_host_alias: "{{ noctua_host }}"
noctua_proxy_port: 8080
noctua_protocol: http
noctua_lookup_url: '{{ noctua_protocol }}://{{ noctua_host }}:{{ noctua_proxy_port }}'

#####
## GOLR.
#########
golr_host: "{{ host }}" 
golr_lookup_port: 8983  
golr_protocol: http
golr_lookup_url: '{{ golr_protocol }}://{{ golr_host }}:{{ golr_lookup_port }}/solr'
golr_neo_lookup_url: '{{ golr_lookup_url }}'
golr_labels_url: '{{ golr_lookup_url }}' 


GOLR_INPUT_ONTOLOGIES: "http://skyhook.berkeleybop.org/release/ontology/extensions/go-gaf.owl 
                        http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl
                        http://skyhook.berkeleybop.org/release/ontology/extensions/gorel.owl"

GOLR_INPUT_GAFS: "http://current.geneontology.org/annotations/aspgd.gaf.gz
                 http://skyhook.berkeleybop.org/release/annotations/cgd.gaf.gz"