svmbir_demo

This is a set of examples showing the use and visualization of data using svmbir reconstructions. See the svmbir documentation for more information about svmbir.

Installation:

1. Download and install svmbir from the svmbir repo and follow the instructions to run a demo in that codebase.

2. Create and activate a conda environment for svmbir_demo using environment.yml. E.g., from a terminal, go to the main svmbir_demo_trial directory and enter:

   conda env create -f environment.yml
   conda activate svmbir_demo
   

3. From the same terminal, invoke:

   pip install napari[all]
   pip install <path>/smbir
   

where <path> is the path to the svmbir directory.

4. Change directory to napari_demo and invoke python demo_3D_shepp_logan.py . In a short time, some static plots will appear, along with a napari 3D viewer window. Use the slider in napari to examine slices or click on the 3D box image to convert to 3D view.