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env_markonv.yaml
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name: markonv
channels:
- bioconda
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- absl-py=0.15.0=pyhd3eb1b0_0
- biopython=1.78=py39h7f8727e_0
- blas=1.0=mkl
- bottleneck=1.3.4=py39hce1f21e_0
- brotli=1.0.9=he6710b0_2
- brotlipy=0.7.0=py39h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2022.4.26=h06a4308_0
- certifi=2021.10.8=py39h06a4308_2
- cffi=1.15.0=py39hd667e15_1
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- configargparse=1.4=pyhd3eb1b0_0
- cryptography=36.0.0=py39h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- cycler=0.11.0=pyhd3eb1b0_0
- dataclasses=0.8=pyh6d0b6a4_7
- dbus=1.13.18=hb2f20db_0
- expat=2.4.4=h295c915_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.13.1=h6c09931_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- glib=2.69.1=h4ff587b_1
- gmp=6.2.1=h2531618_2
- gnutls=3.6.15=he1e5248_0
- grpcio=1.42.0=py39hce63b2e_0
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- icu=58.2=he6710b0_3
- importlib-metadata=4.11.3=py39h06a4308_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9d=h7f8727e_0
- k8=0.2.5=h9a82719_1
- kiwisolver=1.3.2=py39h295c915_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.35.1=h7274673_9
- libffi=3.3=he6710b0_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.2=h7f8727e_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.19.1=h4ff587b_0
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libwebp=1.2.2=h55f646e_0
- libwebp-base=1.2.2=h7f8727e_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- lz4-c=1.9.3=h295c915_1
- markdown=3.3.4=py39h06a4308_0
- matplotlib=3.5.1=py39h06a4308_1
- matplotlib-base=3.5.1=py39ha18d171_1
- minimap2=2.21=h5bf99c6_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py39h7f8727e_0
- mkl_fft=1.3.1=py39hd3c417c_0
- mkl_random=1.2.2=py39h51133e4_0
- mummer=3.23=pl5262h1b792b2_12
- munkres=1.1.4=py_0
- ncurses=6.3=h7f8727e_2
- nettle=3.7.3=hbbd107a_1
- ninja=1.10.2=py39hd09550d_3
- numexpr=2.8.1=py39h6abb31d_0
- numpy-base=1.21.5=py39hf524024_2
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1o=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pcre=8.45=h295c915_0
- perl=5.26.2=h14c3975_0
- pillow=9.0.1=py39h22f2fdc_0
- pip=21.2.4=py39h06a4308_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyqt=5.9.2=py39h2531618_6
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.12=h12debd9_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- pytorch=1.11.0=py3.9_cuda11.3_cudnn8.2.0_0
- pytorch-mutex=1.0=cuda
- qt=5.9.7=h5867ecd_1
- racon=1.4.20=h9a82719_1
- readline=8.1.2=h7f8727e_1
- rebaler=0.2.0=py_1
- seaborn=0.11.2=pyhd3eb1b0_0
- setuptools=58.0.4=py39h06a4308_0
- sip=4.19.13=py39h295c915_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.38.2=hc218d9a_0
- tensorboard=2.0.0=pyhb38c66f_1
- tk=8.6.11=h1ccaba5_0
- torchaudio=0.11.0=py39_cu113
- torchvision=0.12.0=py39_cu113
- tornado=6.1=py39h27cfd23_0
- typing_extensions=4.1.1=pyh06a4308_0
- tzdata=2022a=hda174b7_0
- urllib3=1.26.8=pyhd3eb1b0_0
- werkzeug=2.0.3=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- zipp=3.7.0=pyhd3eb1b0_0
- zlib=1.2.11=h7f8727e_4
- zstd=1.4.9=haebb681_0
- pip:
- chardet==4.0.0
- fast-ctc-decode==0.3.0
- flatbuffers==2.0
- h5py==3.6.0
- idna==2.10
- joblib==1.1.0
- mappy==2.24
- numpy==1.19.5
- onnx==1.11.0
- onnxruntime==1.10.0
- ont-fast5-api==3.3.0
- ont-koi==0.0.7
- ont-remora==0.1.2
- pandas==1.1.5
- parasail==1.2
- progressbar33==2.4
- protobuf==3.20.0
- pyparsing==3.0.7
- pysam==0.18.0
- pytz==2022.1
- requests==2.25.1
- scikit-learn==1.0.2
- scipy==1.5.4
- tabulate==0.8.9
- thop==0.0.31-2005241907
- threadpoolctl==3.1.0
- toml==0.10.2
- tqdm==4.31.1