modernization of Galaxy101

_config.yml

@@ -113,11 +113,12 @@ icon-tag:
   galaxy-chart-select-data: fas fa-database
   galaxy-clear: fas fa-times-circle
   galaxy-columns: fas fa-columns
+  galaxy-multihistory: fas fa-columns
   galaxy-cross: fas fa-times
   galaxy-dataset-map: fas fa-sitemap
   galaxy-delete: fas fa-trash
   galaxy-dropdown: fas fa-caret-down
-  galaxy-history-options: fas fa-caret-down # Replaces gear.
+  galaxy-history-options: fas fa-bars # Replaces gear, fa-caret-down
   galaxy-eye: far fa-eye
   galaxy-gear: fas fa-cog
   galaxy-history: fas fa-columns

faqs/galaxy/activity_bar_how_to_enable.md

@@ -0,0 +1,18 @@
+---
+title: How to enable the Activity Bar
+description: This FAQ demonstrates how to enable the activity bar within the Galaxy interface
+box_type: tip
+layout: faq
+contributors: [nekrut]
+---
+
+If you do not see the Activity Bar it can be enabled as follows:
+
+1. Click on the "**User**" link at the top of the Galaxy interface
+2. Select "**Preferences**"
+3. Scroll down and click on "**Manage Activity Bar**"
+4. Toggle the "**Enable Activity Bar**" switch and voila!
+
+   ![Four steps for enabling the Activity Bar]({% link shared/images/activity_bar_how_to_enable.svg %})
+
+<!-- Original drawing = https://docs.google.com/drawings/d/1yynqEiV66F8idKH5JwTG-4ASuqK62thIwHeCMHRuupg/edit?usp=sharing -->

faqs/galaxy/datasets_change_datatype.md

@@ -4,11 +4,11 @@ description: Galaxy will try to autodetect the datatype of your files, but you m
 area: datasets
 box_type: tip
 layout: faq
-contributors: [bebatut,nsoranzo,hexylena,shiltemann,ajadi-abiola,lldelisle]
+contributors: [bebatut,nsoranzo,hexylena,shiltemann,ajadi-abiola,lldelisle,nekrut]
 ---
 
 * Click on the {% icon galaxy-pencil %} **pencil icon** for the dataset to edit its attributes
-* In the central panel, click on the {% icon galaxy-gear %} **Convert** tab on the top
-* In the lower part {% icon galaxy-chart-select-data %} **Datatypes**, select {% if include.datatype %}`{{ include.datatype }}`{% else %} your desired datatype {% endif %}
-  - tip: you can start typing the datatype into the field to filter the dropdown menu
+* In the central panel, click {% icon galaxy-chart-select-data %} **Datatypes** tab on the top
+* In the {% icon galaxy-chart-select-data %} **Assign Datatype**, select {% if include.datatype %}`{{ include.datatype }}`{% else %} your desired datatype {% endif %} from "*New type*" dropdown  
+  - Tip: you can start typing the datatype into the field to filter the dropdown menu
 * Click the **Save** button

faqs/galaxy/datasets_change_dbkey.md

@@ -4,10 +4,13 @@ description: You can tell Galaxy which dbkey (e.g. reference genome) your datase
 area: datasets
 box_type: tip
 layout: faq
-contributors: [shiltemann,hexylena]
+contributors: [shiltemann,hexylena,nekrut]
 ---
 
-- Click on the {% icon galaxy-pencil %} **pencil icon** for the dataset to edit its attributes
+- Click on the "?" next to database indicator:
+
+  ![UI for changing dbkey]({% link shared/images/datasets_dbkey.svg %})
+
 - In the central panel, change the **Database/Build** field
 - Select your desired database key from the dropdown list{% if include.dbkey %}: `{{ include.dbkey }}`{% endif %}
 - Click the **Save** button

faqs/galaxy/histories_create_new.md

@@ -4,11 +4,12 @@ description: Histories are an important part of Galaxy, most people use a new hi
 area: histories
 box_type: tip
 layout: faq
-contributors: [bebatut,wm75,shiltemann,hexylena,nomadscientist,nsoranzo]
+contributors: [bebatut,wm75,shiltemann,hexylena,nomadscientist,nsoranzo,nekrut]
 ---
 
-Click the {% icon new-history %} icon at the top of the history panel.
+Click the {% icon new-history %} icon at the top of the history panel:
 
-If the {% icon new-history %} is missing:
-1. Click on the {% icon galaxy-gear %} icon (**History options**) on the top of the history panel
-2. Select the option **Create New** from the menu
+![UI for creating new history]({% link shared/images/history_create_new.svg %})
+
+
+<!-- the original drawing can be found here https://docs.google.com/drawings/d/1cCBrLAo4kDGic5QyB70rRiWJAKTenTU8STsKDaLcVU8/edit?usp=sharing -->

faqs/galaxy/histories_list.md

@@ -0,0 +1,30 @@
+---
+title: View a list of all histories
+description: This FAQ demonstrates how to list all histories for a given user
+area: histories
+box_type: tip
+layout: faq
+contributors: [nekrut]
+---
+
+There are multiple ways in which you can view your histories:
+
+1. Viewing histories using {% icon switch-histories %} "**Switch to history**" button:
+
+   Click the "**Switch history**" icon at the top of the history panel to bring up a list of all your histories:
+   ![Listing histories using the "Switch history" button]({% link shared/images/histories_list.svg %})
+
+2. Using the "**Activity Bar**":
+
+   Click the "**Show all histories**" button within the Activity Bar on the left:
+   ![Listing histories using Activity Bar]({% link shared/images/histories_list_via_activity_bar.svg %})
+
+3. Using "**Data**" drop-down:
+
+   Click the "**Data**" link on the top bar of Galaxy interface and select "**Histories**":
+   ![Listing histories using "Data" menu]({% link shared/images/histories_list_via_masthead.svg %})
+
+
+<!-- Original drawing for histories_list.svg = https://docs.google.com/drawings/d/1fiMTFt4q1DwJllnxjddG0LA-XwKkxyXfPlOqUHteX_k/edit?usp=sharing -->
+<!-- Original drawing for histories_list_via_activity_bar.svg = https://docs.google.com/drawings/d/1YyUMe6hhhejhRaqFEBmG_NwUS_9VXFZY2uYSoUNlFwY/edit?usp=sharing -->
+<!-- Original drawing for histories_list_via_mesthead.svg = https://docs.google.com/drawings/d/1ReFUBwfVlbrKz0pJqY0xxnbb3EjRYJRzoq9bi1NqH-w/edit?usp=sharing -->

faqs/galaxy/histories_sharing.md

@@ -12,7 +12,7 @@ Sharing your history allows others to import and access the datasets, parameters
 Access the history sharing menu via the History Options dropdown ({% icon galaxy-history-options %}), and clicking "{% icon history-share %} Share or Publish"
 
 1. **Share via link**
-   - Open the **History Options** {% icon galaxy-gear %} menu (gear icon) at the top of your history panel and select **Share or Publish**
+   - Open the **History Options** {% icon galaxy-history-options %} menu at the top of your history panel and select "{% icon history-share %} Share or Publish" 
      - {% icon galaxy-toggle %} **Make History accessible**
      - A **Share Link** will appear that you give to others
    - Anybody who has this link can view and copy your history
@@ -31,5 +31,5 @@ Access the history sharing menu via the History Options dropdown ({% icon galaxy
    - Select **Histories shared with me**
    - Here you will see all the histories others have shared with you directly
 
-**Note:** If you want to make changes to your history without affecting the shared version, make a copy by going to {% icon galaxy-gear %} *History options* icon in your history and clicking *Copy*
+**Note:** If you want to make changes to your history without affecting the shared version, make a copy by going to **History Options** {% icon galaxy-history-options %} icon in your history and clicking *Copy this History*
 

faqs/galaxy/histories_side_by_side_view.md

@@ -0,0 +1,20 @@
+---
+title: View histories side-by-side
+description: This FAQ demonstrates how to view histories side-by-sde
+area: histories
+box_type: tip
+layout: faq
+contributors: [nekrut]
+---
+
+You can view multiple Galaxy histories at once. This allows to better understand your analyses and also makes itv possible to drag datasets between histories. This is called "**History multiview**". The multiview can be enabled either view History menu or via the ACtivity Bar:
+
+1. Enabling Multiview via History menu is done by first clicking on the {% icon galaxy-history-options %} "**History options**" drop-down and selecting {% icon galaxy-multihistory %} "**Show Histories Side-by-Side option**":
+
+   ![Enabling side-by-side view using History Options menu]({% link shared/images/histories_side_by_side_view.svg %})
+
+2. Clicking the {% icon galaxy-multihistory %} "**History Multiview**" button within the Activity Bar:
+
+   ![Enabling side-by-side view using Activity Bar]({% link shared/images/histories_multiview_via_activity_bar.svg %})
+
+ <!-- Original drawings are accessible from https://docs.google.com/drawings/d/1coRlf1PxDKZYFt9j83MHGVYvwhBZhBkE-PcnhgIQ6gs/edit?usp=sharing and https://docs.google.com/drawings/d/1ksdR7wf2i5CJA1Pa-frCLMlgfITwwpOh2cKay8xDIi0/edit?usp=sharing -->