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vgp assembly: replaced est. genome size calculation with upload via paste data #4796

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merged 2 commits into from
Mar 13, 2024

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abueg
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@abueg abueg commented Mar 11, 2024

hello! 👋🏼

simplifies the genomescope parameter part of the tutorial by having users just copy paste an existing number into a file, instead of parsing a file to get it

@abueg abueg requested a review from a team as a code owner March 11, 2024 23:34
@bgruening
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The advantage of the programmatic approach is that you can use this automatically as an input parameter in another tool.

Maybe we should offer both? An advanced option and the copy and paste option?

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abueg commented Mar 12, 2024

@bgruening ah but when it's uploaded via copy&paste it's still available as input? like it becomes an item in the history and i can still use it later on:
image

for using it in workflows, it will need to get passed through the parse parameter value from input box which i think is used already when we get the parameter programmatically like this (because the evaluation result ends up tabular file if it's the result of cut, etc.)

@bgruening bgruening merged commit e6047df into galaxyproject:main Mar 13, 2024
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Thanks!

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