docs: update pathway analysis tutorial #4486
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| @@ -112,7 +112,7 @@ We first perform an FBA (with COBRApy) optimizing the biomass reaction and recor | |||
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| > <hands-on-title>Calculating the flux of a target using Flux Balance Analysis (FBA)</hands-on-title> | |||
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| > 1. Run {% tool [Flux balance analysis](toolshed.g2.bx.psu.edu/repos/iuc/rpfba/rpfba/5.12.1) %} with the following parameters: | |||
| > 1. Run {% tool [Flux balance analysis](toolshed.g2.bx.psu.edu/repos/tduigou/rptools_rpfba/rptools_rpfba/6.3.2+galaxy0) %} with the following parameters: | |||
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Can you maybe add your changes back to the IUC tool? That way we don't break the tool linage and don't need to update all Galaxy servers.
I pull request to this repo would be great: https://github.com/galaxyproject/tools-iuc
I will help you to get the changes in if you like.
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Converting to draft, pending requested changes |
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Hello @bgruening, I added additional changes regarding (i) new version of tools used in for the RetroSynthesis and the Pathway Analysis tutorials (previous versions were bugged), (ii) update of the workflows associated. Regarding the change from |
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@tduigou a big reason to put the tools into the IUC, is that the 3 large Galaxies will be much more likely to install the tools (because they have some confidence in the quality without having to examine the code of each tool themselves). So we strongly encourage tutorial authors to do this wherever possible. Plus, you get the free help maintaining the wrappers and always keeping them compatible with the latest Galaxy version :) So I would strongly encourage you to add all the tools to IUC. What do you think? |
Update documentation, labels, workflow and version of tools for the Pathway Analysis tutorial.