Merge branch 'NCBI-to-AnnData' of https://github.com/hexhowells/train…

…ing-material into NCBI-to-AnnData
galaxyproject · Dec 12, 2023 · ce4296b · ce4296b
2 parents 3f3c8fb + cd3728b
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diff --git a/topics/single-cell/tutorials/scrna-ncbi-anndata/workflows/NCBI_to_Anndata-test.yml b/topics/single-cell/tutorials/scrna-ncbi-anndata/workflows/NCBI_to_Anndata-test.yml
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+- doc: Converting NCBI Data to the AnnData Format
+  job:
+    GSM5353214_PA_AUG_PB_1A_S1_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353214_PA_AUG_PB_1A_S1_dge.txt
+      filetype: txt
+    GSM5353215_PA_AUG_PB_1B_S2_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353215_PA_AUG_PB_1B_S2_dge.txt
+      filetype: txt
+    GSM5353216_PA_PB1A_Pool_1_3_S50_L002_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353216_PA_PB1A_Pool_1_3_S50_L002_dge.txt
+      filetype: txt
+    GSM5353217_PA_PB1A_Pool_2_S107_L004_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353217_PA_PB1A_Pool_2_S107_L004_dge.txt
+      filetype: txt
+    GSM5353218_PA_PB1B_Pool_1_2_S74_L003_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353218_PA_PB1B_Pool_1_2_S74_L003_dge.txt
+      filetype: txt
+    GSM5353219_PA_PB1B_Pool_2_S24_L001_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353219_PA_PB1B_Pool_2_S24_L001_dge.txt
+      filetype: txt
+    GSM5353220_PA_PB1B_Pool_3_S51_L002_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353220_PA_PB1B_Pool_3_S51_L002_dge.txt
+      filetype: txt
+    GSM5353221_PA_PB2A_Pool_1_3_S25_L001_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353221_PA_PB2A_Pool_1_3_S25_L001_dge.txt
+      filetype: txt
+    GSM5353222_PA_PB2B_Pool_1_3_S52_L002_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353222_PA_PB2B_Pool_1_3_S52_L002_dge.txt
+      filetype: txt
+    GSM5353223_PA_PB2B_Pool_2_S26_L001_dge.txt:
+      class: File
+      location: https://zenodo.org/record/10101768/files/GSM5353223_PA_PB2B_Pool_2_S26_L001_dge.txt
+      filetype: txt
+  outputs:
+    obs:
+      asserts:
+        has_text:
+          text: "AAAGGGGAGTGT-0	0	nan	patient1	left-mid	AUG_PB1A	8165"
+        has_text:
+          text: "GGCAATTGGGAC-2	2	poolA	patient2	right-mid	MAY_PB1A	8848"