From b0804295a840d2fee57d2b65e45de8646cebbb9f Mon Sep 17 00:00:00 2001 From: Mehgan-E <157180722+Mehgan-E@users.noreply.github.com> Date: Fri, 22 Mar 2024 17:33:04 +0000 Subject: [PATCH] Update tutorial - edit Basic QC>Adding in Gene Metadata to correct tool wording --- topics/single-cell/tutorials/scrna-case_alevin/tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/single-cell/tutorials/scrna-case_alevin/tutorial.md b/topics/single-cell/tutorials/scrna-case_alevin/tutorial.md index c22cb2c779883b..ac91b96f6de55d 100644 --- a/topics/single-cell/tutorials/scrna-case_alevin/tutorial.md +++ b/topics/single-cell/tutorials/scrna-case_alevin/tutorial.md @@ -418,7 +418,7 @@ We're now going to re-run {% icon galaxy-refresh %} the tool that extracts infor > - *"Comma-separated list of field names to extract from the GTF (default: use all fields)"*: `gene_id,gene_name,mito` > - *"Append version to transcript identifiers?"*: `Yes` > - *"Flag mitochondrial features?"*: `Yes` - note, this will auto-fill a bunch of acronyms for searching in the GTF for mitochondrial associated genes. This is good! -> - *"Filter a FASTA-format cDNA file to match annotations?"*: `No` - we don't need to, we're done with the FASTA! +> - *"Filter the cDNA file to match the annotations?"*: `No` - we don't need to, we're done with the FASTA! > 2. Check that the output file type is `tabular`. If not, change the file type by clicking the 'Edit attributes'{% icon galaxy-pencil %} on the dataset in the history (as if you were renaming the file.) Then click `Datatypes` and type in `tabular`. Click `Change datatype`.) > 2. Rename {% icon galaxy-pencil %} the annotation table to `Gene Information` {: .hands_on}