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Update faqs/galaxy/analysis_differential_expression_help.md
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jennaj and github-actions[bot] authored Dec 11, 2023
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Expand Up @@ -62,7 +62,7 @@ Reference transcriptome (fasta)

Reference annotation (tabular, GTF, GFF3)

- Reference annotation [in GTF format]({% link faqs/galaxy/datasets_working_with_reference_annotation.md & }) works best.
- Reference annotation [in GTF format]({% link faqs/galaxy/datasets_working_with_reference_annotation.md & %}) works best.
- If a GTF dataset is not available for your genome, a two-column tabular dataset containing `transcript <tab> gene` can be used instead with most of these tools.
- **HTseq-count** requires GTF attributes. Featurecounts is an alternative tool choice.
- Sometimes the tool **gffread** is used to transform GFF3 data to GTF.
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