From 1261abf5addc2c39c973c6fc5283bdbe5e7dc16d Mon Sep 17 00:00:00 2001 From: Pavankumar Videm Date: Sun, 17 Mar 2024 11:38:24 +0100 Subject: [PATCH] Typo DESeq2 hands.on in Ref-based tutorial --- topics/transcriptomics/tutorials/ref-based/tutorial.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/topics/transcriptomics/tutorials/ref-based/tutorial.md b/topics/transcriptomics/tutorials/ref-based/tutorial.md index 6c282c540a528c..7525a336fd8ae9 100644 --- a/topics/transcriptomics/tutorials/ref-based/tutorial.md +++ b/topics/transcriptomics/tutorials/ref-based/tutorial.md @@ -1458,10 +1458,10 @@ We can now run **DESeq2**: > - In *"Factor level"*: > - {% icon param-repeat %} *"Insert Factor level"* > - *"Specify a factor level, typical values could be 'tumor', 'normal', 'treated' or 'control'"*: `PE` -> - In *"Count file(s)"*: `Select all the untreated count files (GSM461177, GSM461178, GSM461180, GSM461181)` +> - In *"Count file(s)"*: `Select all the paired-end count files (GSM461177, GSM461178, GSM461180, GSM461181)` > - {% icon param-repeat %} *"Insert Factor level"* > - *"Specify a factor level, typical values could be 'tumor', 'normal', 'treated' or 'control'"*: `SE` -> - In *"Count file(s)"*: `Select all the untreated count files (GSM461176, GSM461179, GSM461182)` +> - In *"Count file(s)"*: `Select all the single-end count files (GSM461176, GSM461179, GSM461182)` > - *"Files have header?"*: `Yes` > - *"Choice of Input data"*: `Count data (e.g. from HTSeq-count, featureCounts or StringTie)` > - In *"Output options"*: