Updated 2 workflows and tutorials to use the latest version of Galaxy-ML #2141
Annotations
10 errors and 1 warning
topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).
Raw Output:
{"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}
|
topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.
Raw Output:
{"message":"This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.","location":{"path":"./topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:026","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn026"}}
|
topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a Creator. Please edit this workflow in Galaxy to add the correct creator entities
Raw Output:
{"message":"This workflow is missing a Creator. Please edit this workflow in Galaxy to add the correct creator entities","location":{"path":"./topics/statistics/tutorials/FNN/workflows/Intro_To_FNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:024","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn024"}}
|
topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).
Raw Output:
{"message":"This workflow is missing a test, which is now mandatory. Please see [the FAQ on how to add tests to your workflows](https://training.galaxyproject.org/training-material/faqs/gtn/gtn_workflow_testing.html).","location":{"path":"./topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:027","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn027"}}
|
topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.
Raw Output:
{"message":"This workflow is missing a license. Please select a valid OSI license. You can correct this in the Galaxy workflow editor.","location":{"path":"./topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:026","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn026"}}
|
topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga#L1
[rdjsonl] reported by reviewdog 🐶
This workflow is missing a Creator. Please edit this workflow in Galaxy to add the correct creator entities
Raw Output:
{"message":"This workflow is missing a Creator. Please edit this workflow in Galaxy to add the correct creator entities","location":{"path":"./topics/statistics/tutorials/RNN/workflows/Intro_To_RNN_v1.0.10.0.ga","range":{"start":{"line":1,"column":1},"end":{"line":1,"column":1}}},"severity":"ERROR","code":{"value":"GTN:024","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn024"}}
|
topics/statistics/tutorials/RNN/tutorial.md#L258
[rdjsonl] reported by reviewdog 🐶
You have skipped a heading level, please correct this.
<details><summary>Listing of Heading Levels</summary>
```
# Introduction
# Review of feedforward neural networks (FNN)
## Single layer FNN
## Multi-layer FNN
## Learning algorithm
# Recurrent neural networks
## Possible RNN inputs/outputs
## RNN architectures
# Text representation schemes
## Text preprocessing
## Bag of words and TF-IDF
## One hot encoding (OHE)
## Word2Vec
# Get Data
# Sentiment Classification of IMDB movie reviews with RNN
### **Create a deep learning model architecture**
### **Create a deep learning model**
### **Deep learning training and evaluation**
### **Model Prediction**
### **Machine Learning Visualization Extension**
# Conclusion
```
</details>
Raw Output:
{"message":"You have skipped a heading level, please correct this.\n<details><summary>Listing of Heading Levels</summary>\n\n```\n# Introduction\n# Review of feedforward neural networks (FNN)\n## Single layer FNN\n## Multi-layer FNN\n## Learning algorithm\n# Recurrent neural networks\n## Possible RNN inputs/outputs\n## RNN architectures\n# Text representation schemes\n## Text preprocessing\n## Bag of words and TF-IDF\n## One hot encoding (OHE)\n## Word2Vec\n# Get Data\n# Sentiment Classification of IMDB movie reviews with RNN\n### **Create a deep learning model architecture**\n### **Create a deep learning model**\n### **Deep learning training and evaluation**\n### **Model Prediction**\n### **Machine Learning Visualization Extension**\n# Conclusion\n```\n</details>","location":{"path":"./topics/statistics/tutorials/RNN/tutorial.md","range":{"start":{"line":258,"column":1},"end":{"line":258,"column":4}}},"severity":"ERROR","code":{"value":"GTN:028","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn028"},"suggestions":[{"text":"##","range":{"start":{"line":258,"column":1},"end":{"line":258,"column":4}}}]}
|
topics/statistics/tutorials/RNN/tutorial.md#L258
[rdjsonl] reported by reviewdog 🐶
Please do not bold headings, it is unncessary and will potentially cause screen readers to shout them.
Raw Output:
{"message":"Please do not bold headings, it is unncessary and will potentially cause screen readers to shout them.","location":{"path":"./topics/statistics/tutorials/RNN/tutorial.md","range":{"start":{"line":258,"column":5},"end":{"line":258,"column":50}}},"severity":"ERROR","code":{"value":"GTN:029","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn029"},"suggestions":[{"text":"Create a deep learning model architecture","range":{"start":{"line":258,"column":5},"end":{"line":258,"column":50}}}]}
|
topics/statistics/tutorials/RNN/tutorial.md#L287
[rdjsonl] reported by reviewdog 🐶
Please do not bold headings, it is unncessary and will potentially cause screen readers to shout them.
Raw Output:
{"message":"Please do not bold headings, it is unncessary and will potentially cause screen readers to shout them.","location":{"path":"./topics/statistics/tutorials/RNN/tutorial.md","range":{"start":{"line":287,"column":5},"end":{"line":287,"column":37}}},"severity":"ERROR","code":{"value":"GTN:029","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn029"},"suggestions":[{"text":"Create a deep learning model","range":{"start":{"line":287,"column":5},"end":{"line":287,"column":37}}}]}
|
reviewdog: Too many results (annotations) in diff.
You may miss some annotations due to GitHub limitation for annotation created by logging command.
Please check GitHub Actions log console to see all results.
Limitation:
- 10 warning annotations and 10 error annotations per step
- 50 annotations per job (sum of annotations from all the steps)
- 50 annotations per run (separate from the job annotations, these annotations aren't created by users)
Source: https://github.community/t5/GitHub-Actions/Maximum-number-of-annotations-that-can-be-created-using-GitHub/m-p/39085
|
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
The logs for this run have expired and are no longer available.
Loading