From b0ce7ccfa9fcf236ab8e388c32c791ccbdd8ff33 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 18 Jan 2025 03:06:32 +0000 Subject: [PATCH] Update Python dependencies by running `make update-dependencies`. --- lib/galaxy/dependencies/dev-requirements.txt | 20 ++++++++++--------- .../dependencies/pinned-lint-requirements.txt | 2 +- .../dependencies/pinned-requirements.txt | 13 ++++++------ .../pinned-typecheck-requirements.txt | 8 ++++---- 4 files changed, 23 insertions(+), 20 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 448051a006c4..ab019599eb71 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -20,8 +20,8 @@ backports-tarfile==1.2.0 ; python_full_version < '3.12' and platform_machine != backports-zoneinfo==0.2.1 ; python_full_version < '3.9' black==24.8.0 ; python_full_version < '3.9' black==24.10.0 ; python_full_version >= '3.9' -boto3==1.35.93 -botocore==1.35.93 +boto3==1.36.1 +botocore==1.36.1 build==1.2.2.post1 cachecontrol==0.14.2 certifi==2024.12.14 @@ -93,7 +93,8 @@ mdurl==0.1.2 mirakuru==2.5.2 ; python_full_version < '3.9' mirakuru==2.5.3 ; python_full_version >= '3.9' mistune==3.0.2 -more-itertools==10.5.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x' +more-itertools==10.5.0 ; python_full_version < '3.9' and platform_machine != 'ppc64le' and platform_machine != 's390x' +more-itertools==10.6.0 ; python_full_version >= '3.9' and platform_machine != 'ppc64le' and platform_machine != 's390x' msgpack==1.1.0 multidict==6.1.0 mypy-extensions==1.0.0 @@ -124,7 +125,7 @@ prettytable==3.12.0 ; python_full_version >= '3.9' propcache==0.2.0 ; python_full_version < '3.9' propcache==0.2.1 ; python_full_version >= '3.9' psutil==6.1.1 ; sys_platform != 'cygwin' -psycopg==3.2.3 +psycopg==3.2.4 pycparser==2.22 pyee==12.0.0 pygithub==2.5.0 @@ -161,10 +162,11 @@ rdflib==7.0.0 ; python_full_version >= '3.8.1' and python_full_version < '3.9' rdflib==7.1.2 ; python_full_version >= '3.9' readme-renderer==43.0 ; python_full_version < '3.9' readme-renderer==44.0 ; python_full_version >= '3.9' -referencing==0.35.1 ; python_full_version >= '3.9' +referencing==0.35.1 ; python_version < '0' +referencing==0.36.1 ; python_full_version >= '3.9' requests==2.32.3 requests-toolbelt==1.0.0 -responses==0.25.5 +responses==0.25.6 rfc3986==2.0.0 rich==13.9.4 rpds-py==0.20.1 ; python_version < '0' @@ -172,8 +174,8 @@ rpds-py==0.22.3 ; python_full_version >= '3.9' ruamel-yaml==0.18.10 ruamel-yaml-clib==0.2.8 ; python_full_version < '3.9' and platform_python_implementation == 'CPython' ruamel-yaml-clib==0.2.12 ; python_full_version >= '3.9' and python_full_version < '3.13' and platform_python_implementation == 'CPython' -rucio-clients==36.0.0.post2 ; python_full_version >= '3.9' -s3transfer==0.10.4 +rucio-clients==36.1.0 ; python_full_version >= '3.9' +s3transfer==0.11.1 schema-salad==8.7.20241010092723 ; python_full_version < '3.9' schema-salad==8.8.20241206093842 ; python_full_version >= '3.9' scipy==1.10.1 ; python_full_version < '3.9' @@ -228,7 +230,7 @@ wcwidth==0.2.13 websocket-client==1.8.0 werkzeug==3.0.6 ; python_full_version < '3.9' werkzeug==3.1.3 ; python_full_version >= '3.9' -wrapt==1.17.1 +wrapt==1.17.2 wsproto==1.2.0 yarl==1.15.2 ; python_full_version < '3.9' yarl==1.18.3 ; python_full_version >= '3.9' diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 92aec071cf57..120283dac84b 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==24.12.12 mccabe==0.7.0 pycodestyle==2.12.1 pyflakes==3.2.0 -ruff==0.9.1 +ruff==0.9.2 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 79b2ddb19834..b74c02747404 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -2,7 +2,7 @@ # uv export --frozen --no-hashes --no-dev a2wsgi==1.10.8 adal==1.2.7 -aiobotocore==2.17.0 +aiobotocore==2.18.0 aiodataloader==0.4.0 aiofiles==24.1.0 aiohappyeyeballs==2.4.4 @@ -37,7 +37,7 @@ bleach==6.1.0 ; python_full_version < '3.9' bleach==6.2.0 ; python_full_version >= '3.9' boltons==24.1.0 boto==2.49.0 -botocore==1.35.93 +botocore==1.36.1 bx-python==0.13.0 cachecontrol==0.14.2 celery==5.4.0 @@ -112,7 +112,7 @@ jsonschema-specifications==2023.12.1 ; python_full_version < '3.9' jsonschema-specifications==2024.10.1 ; python_full_version >= '3.9' kombu==5.4.2 lagom==2.7.5 -legacy-cgi==2.6.1 ; python_full_version >= '3.13' +legacy-cgi==2.6.2 ; python_full_version >= '3.13' lxml==5.3.0 mako==1.3.8 markdown==3.7 @@ -120,7 +120,7 @@ markdown-it-py==3.0.0 markupsafe==2.1.5 ; python_full_version < '3.9' markupsafe==3.0.2 ; python_full_version >= '3.9' mdurl==0.1.2 -mercurial==6.9 +mercurial==6.9.1 mistune==3.0.2 mrcfile==1.5.3 msal==1.31.1 @@ -182,7 +182,8 @@ pyzmq==26.2.0 rdflib==6.3.2 ; python_full_version < '3.8.1' rdflib==7.0.0 ; python_full_version >= '3.8.1' and python_full_version < '3.9' rdflib==7.1.2 ; python_full_version >= '3.9' -referencing==0.35.1 +referencing==0.35.1 ; python_full_version < '3.9' +referencing==0.36.1 ; python_full_version >= '3.9' refgenconf==0.12.2 regex==2024.11.6 repoze-lru==0.7 @@ -245,7 +246,7 @@ wcwidth==0.2.13 webencodings==0.5.1 webob==1.8.9 whoosh==2.7.4 -wrapt==1.17.1 +wrapt==1.17.2 yacman==0.9.3 yarl==1.15.2 ; python_full_version < '3.9' yarl==1.18.3 ; python_full_version >= '3.9' diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 0a77202cbb30..d4311106b46f 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,13 +1,13 @@ # This file was autogenerated by uv via the following command: # uv export --frozen --no-hashes --only-group=typecheck annotated-types==0.7.0 -boto3-stubs==1.35.97 -botocore-stubs==1.35.97 +boto3-stubs==1.36.2 +botocore-stubs==1.36.2 cffi==1.17.1 ; platform_python_implementation != 'PyPy' cryptography==44.0.0 lxml-stubs==0.5.1 mypy==1.14.1 -mypy-boto3-s3==1.35.93 +mypy-boto3-s3==1.36.0 mypy-extensions==1.0.0 pycparser==2.22 ; platform_python_implementation != 'PyPy' pydantic==2.10.5 @@ -27,7 +27,7 @@ types-python-slugify==8.0.2.20240310 types-pyyaml==6.0.12.20241230 types-requests==2.31.0.6 ; python_full_version < '3.10' types-requests==2.32.0.20241016 ; python_full_version >= '3.10' -types-s3transfer==0.10.4 +types-s3transfer==0.11.1 types-setuptools==75.8.0.20250110 types-six==1.17.0.20241205 types-urllib3==1.26.25.14 ; python_full_version < '3.10'