From 13a28b7d04ece541ac227b719ee6cef6e8c6f5c4 Mon Sep 17 00:00:00 2001 From: dannon Date: Thu, 13 Jun 2024 03:05:54 +0000 Subject: [PATCH 01/19] Import GTN Posts --- .../2024-06-04-gtn-standards-rss/index.md | 16 ++++++++++++++++ .../index.md | 19 +++++++++++++++++++ .../news/2024-06-06-dada2-tutorial/index.md | 19 +++++++++++++++++++ .../index.md | 19 +++++++++++++++++++ 4 files changed, 73 insertions(+) create mode 100644 content/news/2024-06-04-gtn-standards-rss/index.md create mode 100644 content/news/2024-06-06-400-tutorials-milestone/index.md create mode 100644 content/news/2024-06-06-dada2-tutorial/index.md create mode 100644 content/news/2024-06-11-GalaxyTrainingAcademy-Call-Contribution/index.md diff --git a/content/news/2024-06-04-gtn-standards-rss/index.md b/content/news/2024-06-04-gtn-standards-rss/index.md new file mode 100644 index 0000000000..c1859540c1 --- /dev/null +++ b/content/news/2024-06-04-gtn-standards-rss/index.md @@ -0,0 +1,16 @@ +--- +authors: Helena Rasche +date: '2024-06-04' +external_url: https://training.galaxyproject.org/training-material/news/2024/06/04/gtn-standards-rss.html +main_subsite: global +subsites: +- all +tags: +- training +- gtn-news +- news +- gtn infrastructure +tease: '' +title: "Standards compliant\u2122 training news via RSS/Atom" + +--- diff --git a/content/news/2024-06-06-400-tutorials-milestone/index.md b/content/news/2024-06-06-400-tutorials-milestone/index.md new file mode 100644 index 0000000000..125c5ee0a9 --- /dev/null +++ b/content/news/2024-06-06-400-tutorials-milestone/index.md @@ -0,0 +1,19 @@ +--- +authors: "B\xE9r\xE9nice Batut, Helena Rasche, Saskia Hiltemann" +date: '2024-06-06' +external_url: https://training.galaxyproject.org/training-material/news/2024/06/06/400-tutorials-milestone.html +main_subsite: global +subsites: +- all +tags: +- training +- gtn-news +- news +- gtn +tease: 'The Galaxy Training Network (GTN) has reached an exciting milestone: our 400th + tutorial! This achievement is a testament to the dedication and hard work of our + community of educators, researchers, and developers over the last 9 years.' +title: 'Celebrating the Milestone: 400 Tutorials on the Galaxy Training Network!' + +--- +The Galaxy Training Network (GTN) has reached an exciting milestone: our 400th tutorial! This achievement is a testament to the dedication and hard work of our community of educators, researchers, and developers over the last 9 years. \ No newline at end of file diff --git a/content/news/2024-06-06-dada2-tutorial/index.md b/content/news/2024-06-06-dada2-tutorial/index.md new file mode 100644 index 0000000000..fcfa1ae8d6 --- /dev/null +++ b/content/news/2024-06-06-dada2-tutorial/index.md @@ -0,0 +1,19 @@ +--- +authors: "B\xE9r\xE9nice Batut" +date: '2024-06-06' +external_url: https://training.galaxyproject.org/training-material/news/2024/06/06/dada2-tutorial.html +main_subsite: global +subsites: +- all +tags: +- training +- gtn-news +- news +- new tutorial +tease: 'The GTN hosts its 400th tutorial: Building an amplicon sequence variant (ASV) + table from 16S data using DADA2' +title: 'New Galaxy training: Building an amplicon sequence variant (ASV) table from + 16S data using DADA2' + +--- +The GTN hosts its 400th tutorial: Building an amplicon sequence variant (ASV) table from 16S data using DADA2 \ No newline at end of file diff --git a/content/news/2024-06-11-GalaxyTrainingAcademy-Call-Contribution/index.md b/content/news/2024-06-11-GalaxyTrainingAcademy-Call-Contribution/index.md new file mode 100644 index 0000000000..392d69cfac --- /dev/null +++ b/content/news/2024-06-11-GalaxyTrainingAcademy-Call-Contribution/index.md @@ -0,0 +1,19 @@ +--- +authors: "Teresa M\xFCller" +date: '2024-06-11' +external_url: https://training.galaxyproject.org/training-material/news/2024/06/11/GalaxyTrainingAcademy-Call-Contribution.html +main_subsite: global +subsites: +- all +tags: +- training +- gtn-news +- news +- gtn +tease: We are happy to announce the Galaxy Training Academy 2024, a global online + training event, where learners can get to know Galaxy and learn how to analyze data + for various research topics. +title: Open Call for Trainers for the Galaxy Training Academy + +--- +We are happy to announce the Galaxy Training Academy 2024, a global online training event, where learners can get to know Galaxy and learn how to analyze data for various research topics. \ No newline at end of file From a994f13ca45356329f591fce7c8e03aae2bb9441 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Mon, 25 Nov 2024 19:25:57 -0800 Subject: [PATCH 02/19] initial commit of TACC blog post --- content/blog/2024-11-tacc-sdsc-grant/index.md | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 content/blog/2024-11-tacc-sdsc-grant/index.md diff --git a/content/blog/2024-11-tacc-sdsc-grant/index.md b/content/blog/2024-11-tacc-sdsc-grant/index.md new file mode 100644 index 0000000000..11bffde887 --- /dev/null +++ b/content/blog/2024-11-tacc-sdsc-grant/index.md @@ -0,0 +1,25 @@ +--- +title: "Galaxy, TACC and SDSC NIH Award to Develop Cloud Workspace Implementation Center" +date: "2024-11-26" +authors: "Scott Cain" +tease: ""New workspace to make data management sustainable for life sciences data analysis +--- + +The Galaxy teams at Penn State and Johns Hopkins Universities received an +award from the National Institutes of Health (NIH) through the +[https://commonfund.nih.gov/dataecosystem Common Fund Data Ecosystem] (CFDE) to +develop the CFDE Cloud Workspace Implementation Center (CWIC). The project was +awarded for five years under NIH Award #OT2OD037936. + +We will collaborate with the [https://tacc.utexas.edu/ Texas Advanced Computing Center] (TACC) +and the [https://www.sdsc.edu/ San Diego Supercomputing Center] (SDSC) to +build a comprehensive cloud workspace to support the NIH research community. +By building on the Galaxy platform, the CloudBank project, and the powerful +computing and data storage of TACC, the CFDE Cloud Workspace will offer +researchers an intuitive starting point to manage and integrate datasets; +draw from a large, established catalog of bioinformatics tools; build, share, +and search for workflows that align with their datasets; and support +collaboration with trusted colleagues. + +For more information, see +[https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/ the press release at TACC]. From 7e7b8b4eed1471db6a753850e27f8aa5636520ed Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Tue, 26 Nov 2024 08:46:43 -0800 Subject: [PATCH 03/19] adding "advantages" list per Mike suggestion --- content/blog/2024-11-tacc-sdsc-grant/index.md | 25 +++++++++++++++++-- 1 file changed, 23 insertions(+), 2 deletions(-) diff --git a/content/blog/2024-11-tacc-sdsc-grant/index.md b/content/blog/2024-11-tacc-sdsc-grant/index.md index 11bffde887..f77177e1de 100644 --- a/content/blog/2024-11-tacc-sdsc-grant/index.md +++ b/content/blog/2024-11-tacc-sdsc-grant/index.md @@ -2,7 +2,7 @@ title: "Galaxy, TACC and SDSC NIH Award to Develop Cloud Workspace Implementation Center" date: "2024-11-26" authors: "Scott Cain" -tease: ""New workspace to make data management sustainable for life sciences data analysis +tease: "New workspace to make data management sustainable for life sciences data analysis" --- The Galaxy teams at Penn State and Johns Hopkins Universities received an @@ -21,5 +21,26 @@ draw from a large, established catalog of bioinformatics tools; build, share, and search for workflows that align with their datasets; and support collaboration with trusted colleagues. +This CFDE Cloud Workspace will have many advantages: + +- Th open source, widely adopted Galaxy platform interface and capabilities are + already familiar to most life sciences research communities. + +- The platform can leverage all major cloud providers and academic compute + resources, giving unparalleled cost control and flexibility over time. + +- Community adoption and contribution to Galaxy tools and workflows mean the + analytical capability will be expansive on day one with proven extensibility + as new tools arise. + +- The open source nature of the platform and compatibility across cloud + resources assures sustainability beyond the duration of the project. + +- The platform will provide long-term infrastructure stability and empower + research innovation. + +- The initial tier is at no cost to the researcher. + For more information, see -[https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/ the press release at TACC]. +[https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/ the press release at TACC] +and the the [https://commonfund.nih.gov/dataecosystem/FundedResearch NIH CFDE Funded Research] page. From b558d7d87baa47b4486f34c460fdd9a2fa5b1c0d Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Tue, 26 Nov 2024 08:51:36 -0800 Subject: [PATCH 04/19] fixing links (was using mediawiki markup :-) --- content/blog/2024-11-tacc-sdsc-grant/index.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/content/blog/2024-11-tacc-sdsc-grant/index.md b/content/blog/2024-11-tacc-sdsc-grant/index.md index f77177e1de..eb9cc42078 100644 --- a/content/blog/2024-11-tacc-sdsc-grant/index.md +++ b/content/blog/2024-11-tacc-sdsc-grant/index.md @@ -7,12 +7,12 @@ tease: "New workspace to make data management sustainable for life sciences data The Galaxy teams at Penn State and Johns Hopkins Universities received an award from the National Institutes of Health (NIH) through the -[https://commonfund.nih.gov/dataecosystem Common Fund Data Ecosystem] (CFDE) to +[Common Fund Data Ecosystem](https://commonfund.nih.gov/dataecosystem) (CFDE) to develop the CFDE Cloud Workspace Implementation Center (CWIC). The project was awarded for five years under NIH Award #OT2OD037936. -We will collaborate with the [https://tacc.utexas.edu/ Texas Advanced Computing Center] (TACC) -and the [https://www.sdsc.edu/ San Diego Supercomputing Center] (SDSC) to +We will collaborate with the [Texas Advanced Computing Center](https://tacc.utexas.edu/) (TACC) +and the [San Diego Supercomputing Center](https://www.sdsc.edu/) (SDSC) to build a comprehensive cloud workspace to support the NIH research community. By building on the Galaxy platform, the CloudBank project, and the powerful computing and data storage of TACC, the CFDE Cloud Workspace will offer @@ -42,5 +42,5 @@ This CFDE Cloud Workspace will have many advantages: - The initial tier is at no cost to the researcher. For more information, see -[https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/ the press release at TACC] -and the the [https://commonfund.nih.gov/dataecosystem/FundedResearch NIH CFDE Funded Research] page. +[the press release at TACC](https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/) +and the the [NIH CFDE Funded Research](https://commonfund.nih.gov/dataecosystem/FundedResearch) page. From d9a46a70440fe1c0282e484771bfafc7690392fe Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Tue, 26 Nov 2024 09:02:11 -0800 Subject: [PATCH 05/19] minor clean up --- content/blog/2024-11-tacc-sdsc-grant/index.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/content/blog/2024-11-tacc-sdsc-grant/index.md b/content/blog/2024-11-tacc-sdsc-grant/index.md index eb9cc42078..37e2e499a4 100644 --- a/content/blog/2024-11-tacc-sdsc-grant/index.md +++ b/content/blog/2024-11-tacc-sdsc-grant/index.md @@ -23,7 +23,7 @@ collaboration with trusted colleagues. This CFDE Cloud Workspace will have many advantages: -- Th open source, widely adopted Galaxy platform interface and capabilities are +- The open source, widely adopted Galaxy platform interface and capabilities are already familiar to most life sciences research communities. - The platform can leverage all major cloud providers and academic compute @@ -34,7 +34,7 @@ This CFDE Cloud Workspace will have many advantages: as new tools arise. - The open source nature of the platform and compatibility across cloud - resources assures sustainability beyond the duration of the project. + resources ensures sustainability beyond the duration of the project. - The platform will provide long-term infrastructure stability and empower research innovation. @@ -43,4 +43,4 @@ This CFDE Cloud Workspace will have many advantages: For more information, see [the press release at TACC](https://tacc.utexas.edu/news/latest-news/2024/11/25/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/) -and the the [NIH CFDE Funded Research](https://commonfund.nih.gov/dataecosystem/FundedResearch) page. +and the [NIH CFDE Funded Research](https://commonfund.nih.gov/dataecosystem/FundedResearch) page. From 4e70d1b3bf74689bfe69d6480dfb6fcc9973ec99 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Tue, 26 Nov 2024 10:56:59 -0800 Subject: [PATCH 06/19] moving to the news dir where it should be --- content/{blog => news}/2024-11-tacc-sdsc-grant/index.md | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename content/{blog => news}/2024-11-tacc-sdsc-grant/index.md (100%) diff --git a/content/blog/2024-11-tacc-sdsc-grant/index.md b/content/news/2024-11-tacc-sdsc-grant/index.md similarity index 100% rename from content/blog/2024-11-tacc-sdsc-grant/index.md rename to content/news/2024-11-tacc-sdsc-grant/index.md From 95d012b7cd8dc17e08760c63c1679eb51a4425b7 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Wed, 27 Nov 2024 13:34:07 +0100 Subject: [PATCH 07/19] add link and acknowledgment to uptimerobot --- content/use/tab-usegalaxy-footer.md | 8 +++++++- content/use/uptimerobot-logo-dark.png | Bin 0 -> 7215 bytes 2 files changed, 7 insertions(+), 1 deletion(-) create mode 100644 content/use/uptimerobot-logo-dark.png diff --git a/content/use/tab-usegalaxy-footer.md b/content/use/tab-usegalaxy-footer.md index d982b11ddf..7a73d495ac 100644 --- a/content/use/tab-usegalaxy-footer.md +++ b/content/use/tab-usegalaxy-footer.md @@ -1,3 +1,9 @@ -You can [check the status of all UseGalaxy resources here](https://status.galaxyproject.org/) +You can check the status of all UseGalaxy resources on our [status page](https://status.galaxyproject.org/). Monitoring is provided by our friends from UptimeRobot. +
+
+[![UptimeRobot](./uptimerobot-logo-dark.png)](https://stats.uptimerobot.com/gXd4fsKqVy) + +
+
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zc;q6fs+p;JO;$Dp`8+o4kvQt1Yib|Mov8E&an^O8jO~G7q{*#wB~rmzCstWrZ?N>M z@ZW#u{zR?kHt#RQO@|iJP19OT`hEJ2%hu&@L>uC^M3v_eHJG`N?Jt$}(?Xu?&ez#* z%>DR8YHHQ3px3k0MvRWO1LvjBB~B4^2;g`~^<8mCYSYAHRb~?pcY;YZGoA@U#<@mw z=lEj-i^4OT&muqliYeO65!Rz%Mx5|B&nTcI@&tl=ot2wyVl$rS_wd&l_oMXd(U4_2wBxz~=Cfv*H~$y1aPZzjM)itrZbhYR>FW+0Zc# z#^82Z!q{K~lcv~@Ez;JmEni&`{6)^4^bIeXyP^b Date: Wed, 20 Nov 2024 17:36:09 -0500 Subject: [PATCH 08/19] Format yml in content w/ prettier, too, to have consistency. --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index b23bbdafcf..ef3befa08d 100644 --- a/package.json +++ b/package.json @@ -14,7 +14,7 @@ "serve": "http-server ./dist/", "develop": "src/build/run.mjs develop", "preprocess": "src/build/preprocess.mjs preprocess", - "format": "prettier --write '*.js' 'cypress/**/*.js' 'src/**/{*.js,*.mjs,*.scss,*.vue}' '!src/.temp/**'", + "format": "prettier --write '*.js' 'cypress/**/*.js' 'src/**/{*.js,*.mjs,*.scss,*.vue}' 'content/**/{*.js,*.yml}' '!src/.temp/**'", "format:check": "prettier --check '*.js' 'cypress/**/*.js' 'src/**/{*.js,*.mjs,*.scss,*.vue}' '!src/.temp/**'", "markdown:lint": "markdownlint 'content/**/*.md'", "lint": "eslint src/**/*.{mjs,js,vue}", From c78134129c69ca0296ba7ec51ea8cc4e5856e38d Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Wed, 27 Nov 2024 14:31:46 -0500 Subject: [PATCH 09/19] Apply formatting --- content/0examples/navbar.yml | 46 +++---- content/belgium/navbar.yml | 108 ++++++++-------- content/elixir-it/navbar.yml | 106 ++++++++-------- content/erasmusmc/navbar.yml | 126 +++++++++---------- content/eu/navbar.yml | 134 ++++++++++---------- content/freiburg/navbar.yml | 112 ++++++++--------- content/genouest/navbar.yml | 136 ++++++++++----------- content/home/callouts.yml | 26 ++-- content/home/education.yml | 78 ++++++------ content/home/research.yml | 78 ++++++------ content/ifb/navbar.yml | 122 +++++++++---------- content/pasteur/navbar.yml | 126 +++++++++---------- content/projects/esg/expected_results.yml | 16 +-- content/projects/esg/external_links.yml | 18 +-- content/projects/esg/objectives.yml | 16 +-- content/projects/esg/partners.yml | 142 +++++++++++----------- content/projects/esg/work_packages.yml | 24 ++-- content/us/navbar.yml | 14 +-- 18 files changed, 714 insertions(+), 714 deletions(-) diff --git a/content/0examples/navbar.yml b/content/0examples/navbar.yml index 436649d782..897fdf4d4f 100644 --- a/content/0examples/navbar.yml +++ b/content/0examples/navbar.yml @@ -1,25 +1,25 @@ left: -- label: News - relativeTo: subsite - target: news/ -- label: Tools - target: https://usegalaxy-eu.github.io/tools -- label: Example Dropdown - contents: - - label: Local link - target: /faq/ - - label: External link - target: https://usegalaxy.org + - label: News + relativeTo: subsite + target: news/ + - label: Tools + target: https://usegalaxy-eu.github.io/tools + - label: Example Dropdown + contents: + - label: Local link + target: /faq/ + - label: External link + target: https://usegalaxy.org right: -- label: FAQ - target: /support/ -- label: People - target: https://usegalaxy-eu.github.io/people -- label: Help - contents: - - label: Get started - target: /get-started/ - - label: Training - target: /learn/ - - label: Galaxy Help Forum - target: https://help.galaxyproject.org + - label: FAQ + target: /support/ + - label: People + target: https://usegalaxy-eu.github.io/people + - label: Help + contents: + - label: Get started + target: /get-started/ + - label: Training + target: /learn/ + - label: Galaxy Help Forum + target: https://help.galaxyproject.org diff --git a/content/belgium/navbar.yml b/content/belgium/navbar.yml index 3f98bc91c7..19751c9f38 100644 --- a/content/belgium/navbar.yml +++ b/content/belgium/navbar.yml @@ -1,57 +1,57 @@ left: right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Galaxy publications - target: "/publication-library/" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Galaxy publications + target: "/publication-library/" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/elixir-it/navbar.yml b/content/elixir-it/navbar.yml index fe9c8367ce..b1a4c92a13 100644 --- a/content/elixir-it/navbar.yml +++ b/content/elixir-it/navbar.yml @@ -1,56 +1,56 @@ style: - color: "#2c81bb" + color: "#2c81bb" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/elixir-it/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/elixir-it/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/elixir-it/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/elixir-it/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/erasmusmc/navbar.yml b/content/erasmusmc/navbar.yml index ccb61e5168..b52e72949d 100644 --- a/content/erasmusmc/navbar.yml +++ b/content/erasmusmc/navbar.yml @@ -1,66 +1,66 @@ style: - color: "#f17925" + color: "#f17925" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/erasmusmc/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/erasmusmc/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/erasmusmc/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/erasmusmc/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/eu/navbar.yml b/content/eu/navbar.yml index 171d89bdc9..34173ca754 100644 --- a/content/eu/navbar.yml +++ b/content/eu/navbar.yml @@ -1,70 +1,70 @@ style: - color: "#203e5f" + color: "#203e5f" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/people -- label: Tools - target: https://usegalaxy-eu.github.io/tools + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/people + - label: Tools + target: https://usegalaxy-eu.github.io/tools right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: The European Server - target: https://usegalaxy-eu.github.io/about - - label: Publications - target: https://usegalaxy-eu.github.io/citations - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: The European Server + target: https://usegalaxy-eu.github.io/about + - label: Publications + target: https://usegalaxy-eu.github.io/citations + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/freiburg/navbar.yml b/content/freiburg/navbar.yml index 41f9bc35ae..5c662987ad 100644 --- a/content/freiburg/navbar.yml +++ b/content/freiburg/navbar.yml @@ -1,58 +1,58 @@ left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/freiburg/people -- label: Projects - target: https://usegalaxy-eu.github.io/freiburg/projects -- label: Services - target: https://usegalaxy-eu.github.io/freiburg/services + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/freiburg/people + - label: Projects + target: https://usegalaxy-eu.github.io/freiburg/projects + - label: Services + target: https://usegalaxy-eu.github.io/freiburg/services right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Jobs - target: https://usegalaxy-eu.github.io/freiburg/jobs - - label: Publications - target: https://usegalaxy-eu.github.io/freiburg/publications - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Jobs + target: https://usegalaxy-eu.github.io/freiburg/jobs + - label: Publications + target: https://usegalaxy-eu.github.io/freiburg/publications + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/genouest/navbar.yml b/content/genouest/navbar.yml index d9b9693889..8bcf4500c9 100644 --- a/content/genouest/navbar.yml +++ b/content/genouest/navbar.yml @@ -1,71 +1,71 @@ style: - color: white - lightBg: true + color: white + lightBg: true left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/genouest/people -- label: Tools - target: https://usegalaxy-eu.github.io/tools + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/genouest/people + - label: Tools + target: https://usegalaxy-eu.github.io/tools right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: The European Server - target: https://usegalaxy-eu.github.io/about - - label: Publications - target: https://usegalaxy-eu.github.io/citations - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: The European Server + target: https://usegalaxy-eu.github.io/about + - label: Publications + target: https://usegalaxy-eu.github.io/citations + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/home/callouts.yml b/content/home/callouts.yml index fe8df6683f..bbd0620215 100644 --- a/content/home/callouts.yml +++ b/content/home/callouts.yml @@ -1,26 +1,26 @@ heading: "Galaxy is more than you think" callout1: - title: Galaxy is a world-wide community. - content: There are over 500,000 registered Galaxy users from all over the world. Join this lively community to get help, contribute, and learn.
Explore the community
- url: /community/ + title: Galaxy is a world-wide community. + content: There are over 500,000 registered Galaxy users from all over the world. Join this lively community to get help, contribute, and learn.
Explore the community
+ url: /community/ callout2: - title: Galaxy has 1,000s of tools - content: In partnership with BioConda and BioContainers, Galaxy provides instant access to vast number of analysis tools.
Browse available tools
+ title: Galaxy has 1,000s of tools + content: In partnership with BioConda and BioContainers, Galaxy provides instant access to vast number of analysis tools.
Browse available tools
callout3: - title: Galaxy = workflows - content: Create complex workflows and deploy via UI or CLI. + title: Galaxy = workflows + content: Create complex workflows and deploy via UI or CLI. callout4: - title: Galaxy is everything you need to leverage HPC and Clouds - content: Distribute different types of computational jobs across any infrastructure using Pulsar and TPV. + title: Galaxy is everything you need to leverage HPC and Clouds + content: Distribute different types of computational jobs across any infrastructure using Pulsar and TPV. callout5: - title: Rapidly put your tools before 1,000s of users - content: Planemo, Galaxy's SDK, automates creation, testing, and deployment of tools, workflows, and interactive tutorials. + title: Rapidly put your tools before 1,000s of users + content: Planemo, Galaxy's SDK, automates creation, testing, and deployment of tools, workflows, and interactive tutorials. callout6: - title: Galaxy makes learning accessible - content: Galaxy Training Network has 100s of community-vetted, hands-on tutorials on a variety of topics. + title: Galaxy makes learning accessible + content: Galaxy Training Network has 100s of community-vetted, hands-on tutorials on a variety of topics. diff --git a/content/home/education.yml b/content/home/education.yml index 01a4378bc5..7a23e9a21e 100644 --- a/content/home/education.yml +++ b/content/home/education.yml @@ -3,42 +3,42 @@ heading: Learn content: From curated tools and workflows to self-paced tutorials available on the Galaxy Training Network (GTN), there are plenty of materials to learn from. education: -- title: Tutorials - content: Access topic-based trainings for free. - icon: fas fa-graduation-cap - url: https://training.galaxyproject.org - -- title: Videos - content: Watch to learn, including conferences. - icon: far fa-play-circle - url: https://www.youtube.com/channel/UCwoMMZPbz1L9AZzvIvrvqYA - -- title: Vetted workflows - content: (Re)use or adapt quality workflows. - icon: fas fa-sitemap - url: https://training.galaxyproject.org/training-material/workflows/list - -- title: Blog - content: Read highlights from the experts. - icon: fas fa-comment - url: /blog/ - -- title: Data - content: Pull data from popular repositories. - icon: fas fa-database - url: https://training.galaxyproject.org/training-material/topics/admin/tutorials/data-library/tutorial.html - -- title: Community - content: Explore the world-wide community. - icon: fas fa-user-friends - url: https://galaxyproject.org/community/ - -- title: FAQ - content: Common questions. Good answers. - icon: far fa-question-circle - url: https://training.galaxyproject.org/training-material/faqs/index.html - -- title: Help & support - content: Advice is always available. - icon: fas fa-hands-helping - url: https://help.galaxyproject.org/ + - title: Tutorials + content: Access topic-based trainings for free. + icon: fas fa-graduation-cap + url: https://training.galaxyproject.org + + - title: Videos + content: Watch to learn, including conferences. + icon: far fa-play-circle + url: https://www.youtube.com/channel/UCwoMMZPbz1L9AZzvIvrvqYA + + - title: Vetted workflows + content: (Re)use or adapt quality workflows. + icon: fas fa-sitemap + url: https://training.galaxyproject.org/training-material/workflows/list + + - title: Blog + content: Read highlights from the experts. + icon: fas fa-comment + url: /blog/ + + - title: Data + content: Pull data from popular repositories. + icon: fas fa-database + url: https://training.galaxyproject.org/training-material/topics/admin/tutorials/data-library/tutorial.html + + - title: Community + content: Explore the world-wide community. + icon: fas fa-user-friends + url: https://galaxyproject.org/community/ + + - title: FAQ + content: Common questions. Good answers. + icon: far fa-question-circle + url: https://training.galaxyproject.org/training-material/faqs/index.html + + - title: Help & support + content: Advice is always available. + icon: fas fa-hands-helping + url: https://help.galaxyproject.org/ diff --git a/content/home/research.yml b/content/home/research.yml index 7aa3fce375..dedf320504 100644 --- a/content/home/research.yml +++ b/content/home/research.yml @@ -1,49 +1,49 @@ heading: Galactic pulse research1: - title: Recent publications - content: "Galaxy can be installed locally, fine-tuned with a tailored toolset and no usage quotas." - url: "https://www.zotero.org/groups/1732893/galaxy" - links: - - title: "Dantan, L. et al. \"Microbial education plays a crucial role in harnessing the beneficial properties of microbiota for infectious disease protection in Crassostrea gigas\" Sci Rep 14, 26914 (2024)" - url: "https://doi.org/10.1038/s41598-024-76096-4" - - title: "Yujing Ren et al. \"Effects of microplastics on litter decomposition in wetland soil\" Environmental Pollution, Volume 343, (2024)" - url: "https://doi.org/10.1016/j.envpol.2023.123145" - - title: "Mathieu-Bégné, E et al. \"Schistosoma haematobium and Schistosoma bovis first generation hybrids undergo gene expressions changes consistent with species compatibility and heterosis\" PLOS Neglected Tropical Diseases (2024)" - url: "https://doi.org/10.1371/journal.pntd.0012267" - - title: "Sarmah, P. et al. \"The functional and structural characterisation of the bZIP transcription factors from Myristica fragrans Houtt. associated to plant disease-resistant defence: An insight from transcriptomics and computational modelling\" International Journal of Biological Macromolecules, Vol 268, Part 2 (2024)" - url: "https://doi.org/10.1016/j.ijbiomac.2024.131817" + title: Recent publications + content: "Galaxy can be installed locally, fine-tuned with a tailored toolset and no usage quotas." + url: "https://www.zotero.org/groups/1732893/galaxy" + links: + - title: 'Dantan, L. et al. "Microbial education plays a crucial role in harnessing the beneficial properties of microbiota for infectious disease protection in Crassostrea gigas" Sci Rep 14, 26914 (2024)' + url: "https://doi.org/10.1038/s41598-024-76096-4" + - title: 'Yujing Ren et al. "Effects of microplastics on litter decomposition in wetland soil" Environmental Pollution, Volume 343, (2024)' + url: "https://doi.org/10.1016/j.envpol.2023.123145" + - title: 'Mathieu-Bégné, E et al. "Schistosoma haematobium and Schistosoma bovis first generation hybrids undergo gene expressions changes consistent with species compatibility and heterosis" PLOS Neglected Tropical Diseases (2024)' + url: "https://doi.org/10.1371/journal.pntd.0012267" + - title: 'Sarmah, P. et al. "The functional and structural characterisation of the bZIP transcription factors from Myristica fragrans Houtt. associated to plant disease-resistant defence: An insight from transcriptomics and computational modelling" International Journal of Biological Macromolecules, Vol 268, Part 2 (2024)' + url: "https://doi.org/10.1016/j.ijbiomac.2024.131817" research3: - title: Popular tutorials - url: "https://training.galaxyproject.org" - content: "Choose from these self-paced tutorials to perform a comprehensive analysis or hone your skills on a specific topic." - button: - title: View all tutorials + title: Popular tutorials url: "https://training.galaxyproject.org" - links: - - title: "Visualization of RNA-Seq results with Volcano Plot" - url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html" - - title: "Reference-based RNA-Seq data analysis" - url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html" - - title: Quality Control - url: "https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html" + content: "Choose from these self-paced tutorials to perform a comprehensive analysis or hone your skills on a specific topic." + button: + title: View all tutorials + url: "https://training.galaxyproject.org" + links: + - title: "Visualization of RNA-Seq results with Volcano Plot" + url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html" + - title: "Reference-based RNA-Seq data analysis" + url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html" + - title: Quality Control + url: "https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html" research5: - title: "Research highlights" - content: "See how Galaxy cooperates and helps other projects. These are also great exemplars of how Galaxy is being used in production settings." + title: "Research highlights" + content: "See how Galaxy cooperates and helps other projects. These are also great exemplars of how Galaxy is being used in production settings." research6: - logos: - - title: VGP logo - url: /projects/vgp/ - image: /images/vgp/vgp-logo-light.png - width: "100%" - - title: microGalaxy logo - url: /projects/covid19/ - image: /images/logos/gxy-covid.png - width: "95%" - - title: MPXV logo - url: /projects/mpxv/ - image: /images/mpxv/mpxv_logo.png - width: "50%" + logos: + - title: VGP logo + url: /projects/vgp/ + image: /images/vgp/vgp-logo-light.png + width: "100%" + - title: microGalaxy logo + url: /projects/covid19/ + image: /images/logos/gxy-covid.png + width: "95%" + - title: MPXV logo + url: /projects/mpxv/ + image: /images/mpxv/mpxv_logo.png + width: "50%" diff --git a/content/ifb/navbar.yml b/content/ifb/navbar.yml index 857298a8e0..e067e78383 100644 --- a/content/ifb/navbar.yml +++ b/content/ifb/navbar.yml @@ -1,64 +1,64 @@ style: - color: white - lightBg: true + color: white + lightBg: true left: -- label: News - relativeTo: subsite - target: news/ -- label: People - target: https://usegalaxy-eu.github.io/ifb/people + - label: News + relativeTo: subsite + target: news/ + - label: People + target: https://usegalaxy-eu.github.io/ifb/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Galaxy publications - target: "/publication-library/" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Galaxy publications + target: "/publication-library/" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/pasteur/navbar.yml b/content/pasteur/navbar.yml index e14ac8e4bd..c92cd97867 100644 --- a/content/pasteur/navbar.yml +++ b/content/pasteur/navbar.yml @@ -1,66 +1,66 @@ style: - color: "#7591be" + color: "#7591be" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/pasteur/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/pasteur/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/pasteur/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/pasteur/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/projects/esg/expected_results.yml b/content/projects/esg/expected_results.yml index 34503b4914..6e6cb062e5 100644 --- a/content/projects/esg/expected_results.yml +++ b/content/projects/esg/expected_results.yml @@ -1,14 +1,14 @@ heading: Expected Results expected_results: -- title: Pulsar Network - content: A mature and tested (TRL-9) distributed compute network with demonstrated usage across at least 12 European partners. + - title: Pulsar Network + content: A mature and tested (TRL-9) distributed compute network with demonstrated usage across at least 12 European partners. -- title: ScienceGateways - content: 6 national Galaxy instances operational and proven by the scientific community with more than 100,000 users. + - title: ScienceGateways + content: 6 national Galaxy instances operational and proven by the scientific community with more than 100,000 users. -- title: Communities - content: Science Gateway with a custom set of tools and workflows for the Biodiversity/Climate, Materials Science and Astrophysics community. + - title: Communities + content: Science Gateway with a custom set of tools and workflows for the Biodiversity/Climate, Materials Science and Astrophysics community. -- title: FAIR data - content: EOSC-catalogued FAIR data and workflows that can be found, consumed, created and published by users of the EuroScienceGateway, demonstrated for each of the 3 domain-specific use-cases. + - title: FAIR data + content: EOSC-catalogued FAIR data and workflows that can be found, consumed, created and published by users of the EuroScienceGateway, demonstrated for each of the 3 domain-specific use-cases. diff --git a/content/projects/esg/external_links.yml b/content/projects/esg/external_links.yml index c9b842ff36..cf1bd179dc 100644 --- a/content/projects/esg/external_links.yml +++ b/content/projects/esg/external_links.yml @@ -1,12 +1,12 @@ heading: Projects Part of ESG external_links: -- name: Galaxy Training Network - image: ./link-images/GTNLogoTrans300.png - url: https://training.galaxyproject.org/ -- name: Pulsar - image: ./link-images/pulsar_transparent.png - url: https://pulsar-network.readthedocs.io/ -- name: Galaxy EU - image: ./link-images/useGalaxy.eu.256.png - url: https://usegalaxy.eu/ + - name: Galaxy Training Network + image: ./link-images/GTNLogoTrans300.png + url: https://training.galaxyproject.org/ + - name: Pulsar + image: ./link-images/pulsar_transparent.png + url: https://pulsar-network.readthedocs.io/ + - name: Galaxy EU + image: ./link-images/useGalaxy.eu.256.png + url: https://usegalaxy.eu/ diff --git a/content/projects/esg/objectives.yml b/content/projects/esg/objectives.yml index 21490fcd23..4ae1d74add 100644 --- a/content/projects/esg/objectives.yml +++ b/content/projects/esg/objectives.yml @@ -1,14 +1,14 @@ heading: Objectives objectives: -- title: Objective 1 - content: Accessible e-Infrastructure resources for European scientists to enable pioneering data-driven research across scientific domains. + - title: Objective 1 + content: Accessible e-Infrastructure resources for European scientists to enable pioneering data-driven research across scientific domains. -- title: Objective 2 - content: Support the varieties of analysis types and diverse usage patterns through efficient and smart job distribution to appropriate and sustainable infrastructures. + - title: Objective 2 + content: Support the varieties of analysis types and diverse usage patterns through efficient and smart job distribution to appropriate and sustainable infrastructures. -- title: Objective 3 - content: The application of FAIR principles to workflows and adoption of FAIR Digital Objects to stimulate reusable and reproducible research and enable the EOSC Interoperability Framework. + - title: Objective 3 + content: The application of FAIR principles to workflows and adoption of FAIR Digital Objects to stimulate reusable and reproducible research and enable the EOSC Interoperability Framework. -- title: Objective 4 - content: Adoption of the EuroScienceGateway by researchers in diverse scientific disciplines. + - title: Objective 4 + content: Adoption of the EuroScienceGateway by researchers in diverse scientific disciplines. diff --git a/content/projects/esg/partners.yml b/content/projects/esg/partners.yml index fc6e609b77..e22a877b14 100644 --- a/content/projects/esg/partners.yml +++ b/content/projects/esg/partners.yml @@ -1,72 +1,72 @@ partners: -- name: VIB - image: ./partner-logos/VIB.svg - website: https://vib.be/ - -- name: The University of Manchester - image: ./partner-logos/UNIMAN.svg - website: https://www.manchester.ac.uk/ - -- name: University Paris - image: ./partner-logos/UNIVERSITY PARIS.png - website: https://u-paris.fr/ - -- name: Universita Degli Studi Frienze - image: ./partner-logos/UNIFI.png - website: https://www.bio.unifi.it/ - -- name: UK Research and Innovation - image: ./partner-logos/UKRI_STF_Council-Logo_Horiz-RGB.png - website: https://www.ukri.org/ - -- name: Universitat de Barcelona - image: ./partner-logos/UB LOGO.png - website: https://www.ub.edu/ - -- name: TÜBİTAK - image: ./partner-logos/TÜBİTAK ULAKBİM Logo.svg - website: https://www.tubitak.gov.tr/ - -- name: University of Oslo - image: ./partner-logos/University_of_Oslo_seal.svg.png - website: https://www.uio.no/ - -- name: AGH University of Science and Technology - image: ./partner-logos/uni_agh-1.png - website: https://www.agh.edu.pl/ - -- name: Istituto Nazionale di Fisica Nucleare - image: ./partner-logos/INFN.jpg - website: https://home.infn.it/ - -- name: EPFL - image: ./partner-logos/epfl-logo-new.svg - website: https://www.epfl.ch/ - -- name: cnrs - image: ./partner-logos/CNRS.svg.png - website: https://www.cnrs.fr/ - -- name: Consiglio Nazionale delle Ricerche - image: ./partner-logos/CNR.png - website: https://www.cnr.it/ - -- name: cesnet - image: ./partner-logos/CESNET LOGO.png - website: https://www.cesnet.cz/ - -- name: Barcelona Supercomputing Center - image: ./partner-logos/BSC-logo-paths.svg - website: https://www.bsc.es/ - -- name: Institute of Informatics - SAS - image: ./partner-logos/uisav_logo_en.png - website: https://www.sav.sk/?doc=ins-org-ins&institute_no=60 - -- name: Advanced computing for research - image: ./partner-logos/EGI_Logo_RGB.svg - website: https://www.egi.eu/ - -- name: ACK Cyfronet AGH - image: ./partner-logos/CyfronetLogo.png - website: https://www.cyfronet.pl/ + - name: VIB + image: ./partner-logos/VIB.svg + website: https://vib.be/ + + - name: The University of Manchester + image: ./partner-logos/UNIMAN.svg + website: https://www.manchester.ac.uk/ + + - name: University Paris + image: ./partner-logos/UNIVERSITY PARIS.png + website: https://u-paris.fr/ + + - name: Universita Degli Studi Frienze + image: ./partner-logos/UNIFI.png + website: https://www.bio.unifi.it/ + + - name: UK Research and Innovation + image: ./partner-logos/UKRI_STF_Council-Logo_Horiz-RGB.png + website: https://www.ukri.org/ + + - name: Universitat de Barcelona + image: ./partner-logos/UB LOGO.png + website: https://www.ub.edu/ + + - name: TÜBİTAK + image: ./partner-logos/TÜBİTAK ULAKBİM Logo.svg + website: https://www.tubitak.gov.tr/ + + - name: University of Oslo + image: ./partner-logos/University_of_Oslo_seal.svg.png + website: https://www.uio.no/ + + - name: AGH University of Science and Technology + image: ./partner-logos/uni_agh-1.png + website: https://www.agh.edu.pl/ + + - name: Istituto Nazionale di Fisica Nucleare + image: ./partner-logos/INFN.jpg + website: https://home.infn.it/ + + - name: EPFL + image: ./partner-logos/epfl-logo-new.svg + website: https://www.epfl.ch/ + + - name: cnrs + image: ./partner-logos/CNRS.svg.png + website: https://www.cnrs.fr/ + + - name: Consiglio Nazionale delle Ricerche + image: ./partner-logos/CNR.png + website: https://www.cnr.it/ + + - name: cesnet + image: ./partner-logos/CESNET LOGO.png + website: https://www.cesnet.cz/ + + - name: Barcelona Supercomputing Center + image: ./partner-logos/BSC-logo-paths.svg + website: https://www.bsc.es/ + + - name: Institute of Informatics - SAS + image: ./partner-logos/uisav_logo_en.png + website: https://www.sav.sk/?doc=ins-org-ins&institute_no=60 + + - name: Advanced computing for research + image: ./partner-logos/EGI_Logo_RGB.svg + website: https://www.egi.eu/ + + - name: ACK Cyfronet AGH + image: ./partner-logos/CyfronetLogo.png + website: https://www.cyfronet.pl/ diff --git a/content/projects/esg/work_packages.yml b/content/projects/esg/work_packages.yml index 392733161e..59a389b2a1 100644 --- a/content/projects/esg/work_packages.yml +++ b/content/projects/esg/work_packages.yml @@ -1,25 +1,25 @@ title: "Work Packages" summary: - title: "Work Packages" - content: "EuroScienceGateway is organized into multiple work packages, each with it's own focus." + title: "Work Packages" + content: "EuroScienceGateway is organized into multiple work packages, each with it's own focus." wp1: - title: "Work Package 1" - content: "Project Management, Coordination and Dissemination." + title: "Work Package 1" + content: "Project Management, Coordination and Dissemination." wp2: - title: "Work Package 2" - content: "Stimulate FAIR and reusable research." + title: "Work Package 2" + content: "Stimulate FAIR and reusable research." wp3: - title: "Work Package 3" - content: "Pulsar Network: Distributed heterogeneous compute." + title: "Work Package 3" + content: "Pulsar Network: Distributed heterogeneous compute." wp4: - title: "Work Package 4" - content: "Building blocks for a sustainable operating model." + title: "Work Package 4" + content: "Building blocks for a sustainable operating model." wp5: - title: "Work Package 5" - content: "Community engagement, adoption and onboarding." + title: "Work Package 5" + content: "Community engagement, adoption and onboarding." diff --git a/content/us/navbar.yml b/content/us/navbar.yml index 871267ef5f..34d4c6e79d 100644 --- a/content/us/navbar.yml +++ b/content/us/navbar.yml @@ -1,9 +1,9 @@ style: - color: "#4e7152" + color: "#4e7152" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ From e5d403e41665307b7efe381ac0a6504da18a6278 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Wed, 27 Nov 2024 11:58:03 -0800 Subject: [PATCH 10/19] changing the name of the dir to include full date --- .../index.md | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename content/news/{2024-11-tacc-sdsc-grant => 2024-11-27-tacc-sdsc-grant}/index.md (100%) diff --git a/content/news/2024-11-tacc-sdsc-grant/index.md b/content/news/2024-11-27-tacc-sdsc-grant/index.md similarity index 100% rename from content/news/2024-11-tacc-sdsc-grant/index.md rename to content/news/2024-11-27-tacc-sdsc-grant/index.md From 68f0ddee5f9be4d5cf49043fefc491f71228f97b Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Wed, 27 Nov 2024 14:01:35 -0800 Subject: [PATCH 11/19] adding a tag might be necessary --- content/news/2024-11-27-tacc-sdsc-grant/index.md | 1 + 1 file changed, 1 insertion(+) diff --git a/content/news/2024-11-27-tacc-sdsc-grant/index.md b/content/news/2024-11-27-tacc-sdsc-grant/index.md index 37e2e499a4..afb43dcf30 100644 --- a/content/news/2024-11-27-tacc-sdsc-grant/index.md +++ b/content/news/2024-11-27-tacc-sdsc-grant/index.md @@ -2,6 +2,7 @@ title: "Galaxy, TACC and SDSC NIH Award to Develop Cloud Workspace Implementation Center" date: "2024-11-26" authors: "Scott Cain" +tags: [grants] tease: "New workspace to make data management sustainable for life sciences data analysis" --- From 554154d9ad0856866675f636a24b465b9669dad3 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Wed, 27 Nov 2024 14:16:08 -0800 Subject: [PATCH 12/19] adding us subsite --- content/news/2024-11-27-tacc-sdsc-grant/index.md | 1 + 1 file changed, 1 insertion(+) diff --git a/content/news/2024-11-27-tacc-sdsc-grant/index.md b/content/news/2024-11-27-tacc-sdsc-grant/index.md index afb43dcf30..4cc2c1ec9c 100644 --- a/content/news/2024-11-27-tacc-sdsc-grant/index.md +++ b/content/news/2024-11-27-tacc-sdsc-grant/index.md @@ -3,6 +3,7 @@ title: "Galaxy, TACC and SDSC NIH Award to Develop Cloud Workspace Implementatio date: "2024-11-26" authors: "Scott Cain" tags: [grants] +subsites: [us] tease: "New workspace to make data management sustainable for life sciences data analysis" --- From b3c9df5500a4941a50c65a70b6bc0e985fb9524e Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Wed, 27 Nov 2024 17:24:24 -0500 Subject: [PATCH 13/19] Include for toplevel site as well --- content/news/2024-11-27-tacc-sdsc-grant/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/news/2024-11-27-tacc-sdsc-grant/index.md b/content/news/2024-11-27-tacc-sdsc-grant/index.md index 4cc2c1ec9c..b1dede3a68 100644 --- a/content/news/2024-11-27-tacc-sdsc-grant/index.md +++ b/content/news/2024-11-27-tacc-sdsc-grant/index.md @@ -3,7 +3,7 @@ title: "Galaxy, TACC and SDSC NIH Award to Develop Cloud Workspace Implementatio date: "2024-11-26" authors: "Scott Cain" tags: [grants] -subsites: [us] +subsites: [global, us] tease: "New workspace to make data management sustainable for life sciences data analysis" --- From 3918598df0ad10696c49c45cdac56b12a31a5271 Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Thu, 28 Nov 2024 08:14:11 -0500 Subject: [PATCH 14/19] Shift uptimerobot image ineline (inline-p, inline-div needed to be on the parent container here so we shift the outer div to hold it all) --- content/use/tab-usegalaxy-footer.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/content/use/tab-usegalaxy-footer.md b/content/use/tab-usegalaxy-footer.md index 7a73d495ac..535f84d974 100644 --- a/content/use/tab-usegalaxy-footer.md +++ b/content/use/tab-usegalaxy-footer.md @@ -1,7 +1,9 @@ -You can check the status of all UseGalaxy resources on our [status page](https://status.galaxyproject.org/). Monitoring is provided by our friends from UptimeRobot.
-
+ +You can check the status of all UseGalaxy resources on our [status page](https://status.galaxyproject.org/). Monitoring is provided by our friends from + +
[![UptimeRobot](./uptimerobot-logo-dark.png)](https://stats.uptimerobot.com/gXd4fsKqVy) From 416a8c8102dd7e6aca8f7f9b7a15bf526952e3d6 Mon Sep 17 00:00:00 2001 From: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com> Date: Mon, 2 Dec 2024 12:21:12 +0000 Subject: [PATCH 15/19] add CoFest event --- content/events/2024-11-13-BDS/index.md | 16 ++++++++-------- content/events/2024-12-06-SPOC_CoFest/index.md | 14 ++++++++++++++ 2 files changed, 22 insertions(+), 8 deletions(-) create mode 100644 content/events/2024-12-06-SPOC_CoFest/index.md diff --git a/content/events/2024-11-13-BDS/index.md b/content/events/2024-11-13-BDS/index.md index 6686d65084..7443b987e9 100644 --- a/content/events/2024-11-13-BDS/index.md +++ b/content/events/2024-11-13-BDS/index.md @@ -1,14 +1,14 @@ --- -title: Biological Data Science -date: '2024-11-13' -days: 4 -tease: "The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research." +title: Single-cell and sPatial Omics | Collaboration Fest +date: '2024-12-06' +days: 1 +tease: "The Single-cell and sPatial Omics Community of Practice (SPOC) are hosting their first Collaboration Fest, welcoming new and experienced contributors to our training materials." continent: NA location: - name: "Cold Spring Harbor, NY, USA" - url: https://www.agbt.org/events/general-meeting/](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=24 + url: https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html gtn: true -contact: "Kelley McGrath: mcgrath@cshl.edu" -tags: [conference] +tags: [cofest] subsites: [all] --- + +Join our Single-cell and sPatial Omics Community of Practice by following the [link to our event](https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html)! diff --git a/content/events/2024-12-06-SPOC_CoFest/index.md b/content/events/2024-12-06-SPOC_CoFest/index.md new file mode 100644 index 0000000000..6686d65084 --- /dev/null +++ b/content/events/2024-12-06-SPOC_CoFest/index.md @@ -0,0 +1,14 @@ +--- +title: Biological Data Science +date: '2024-11-13' +days: 4 +tease: "The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research." +continent: NA +location: + name: "Cold Spring Harbor, NY, USA" + url: https://www.agbt.org/events/general-meeting/](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=24 +gtn: true +contact: "Kelley McGrath: mcgrath@cshl.edu" +tags: [conference] +subsites: [all] +--- From 67b474061dd6a1745994e8e4118387a6934b96dc Mon Sep 17 00:00:00 2001 From: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com> Date: Mon, 2 Dec 2024 12:22:00 +0000 Subject: [PATCH 16/19] swap --- content/events/2024-11-13-BDS/index.md | 16 ++++++++-------- content/events/2024-12-06-SPOC_CoFest/index.md | 16 ++++++++-------- 2 files changed, 16 insertions(+), 16 deletions(-) diff --git a/content/events/2024-11-13-BDS/index.md b/content/events/2024-11-13-BDS/index.md index 7443b987e9..6686d65084 100644 --- a/content/events/2024-11-13-BDS/index.md +++ b/content/events/2024-11-13-BDS/index.md @@ -1,14 +1,14 @@ --- -title: Single-cell and sPatial Omics | Collaboration Fest -date: '2024-12-06' -days: 1 -tease: "The Single-cell and sPatial Omics Community of Practice (SPOC) are hosting their first Collaboration Fest, welcoming new and experienced contributors to our training materials." +title: Biological Data Science +date: '2024-11-13' +days: 4 +tease: "The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research." continent: NA location: - url: https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html + name: "Cold Spring Harbor, NY, USA" + url: https://www.agbt.org/events/general-meeting/](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=24 gtn: true -tags: [cofest] +contact: "Kelley McGrath: mcgrath@cshl.edu" +tags: [conference] subsites: [all] --- - -Join our Single-cell and sPatial Omics Community of Practice by following the [link to our event](https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html)! diff --git a/content/events/2024-12-06-SPOC_CoFest/index.md b/content/events/2024-12-06-SPOC_CoFest/index.md index 6686d65084..7443b987e9 100644 --- a/content/events/2024-12-06-SPOC_CoFest/index.md +++ b/content/events/2024-12-06-SPOC_CoFest/index.md @@ -1,14 +1,14 @@ --- -title: Biological Data Science -date: '2024-11-13' -days: 4 -tease: "The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research." +title: Single-cell and sPatial Omics | Collaboration Fest +date: '2024-12-06' +days: 1 +tease: "The Single-cell and sPatial Omics Community of Practice (SPOC) are hosting their first Collaboration Fest, welcoming new and experienced contributors to our training materials." continent: NA location: - name: "Cold Spring Harbor, NY, USA" - url: https://www.agbt.org/events/general-meeting/](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=24 + url: https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html gtn: true -contact: "Kelley McGrath: mcgrath@cshl.edu" -tags: [conference] +tags: [cofest] subsites: [all] --- + +Join our Single-cell and sPatial Omics Community of Practice by following the [link to our event](https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html)! From 7432fa2aad70898a5d005a0e822683f7ba63e2b6 Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Mon, 2 Dec 2024 13:47:19 +0100 Subject: [PATCH 17/19] Update Affiliation closes #2845 --- content/community/governance/geb/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/community/governance/geb/index.md b/content/community/governance/geb/index.md index 99366fd196..68ba421bcd 100644 --- a/content/community/governance/geb/index.md +++ b/content/community/governance/geb/index.md @@ -171,6 +171,6 @@ The GEB is a group of Galaxy advocates from around the world. It is currently (2 * **[Wendi Bacon](https://www.open.ac.uk/people/wb2845)** * [The Open University](https://www.open.ac.uk/research/faculties), United Kingdom * **[Gareth Price](https://www.linkedin.com/in/gareth-price-60025b88/)** - * [QCIF](https://www.qcif.edu.au/), [The University of Queensland](https://www.uq.edu.au/), Australia + * [Australian BioCommons](https://www.biocommons.org.au/), [The University of Queensland](https://www.uq.edu.au/), Australia * But, well, obviously not. Thank you Ross. From 671da90bbc3a3068062d61a17698c0a80ccf0fa9 Mon Sep 17 00:00:00 2001 From: Hans-Rudolf Hotz Date: Mon, 2 Dec 2024 15:31:07 +0100 Subject: [PATCH 18/19] update number of swiss emails at usegalaxy.eu --- content/community/sig/switzerland/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/community/sig/switzerland/index.md b/content/community/sig/switzerland/index.md index 229d2eb35e..868085fb15 100644 --- a/content/community/sig/switzerland/index.md +++ b/content/community/sig/switzerland/index.md @@ -3,7 +3,7 @@ title: "Galaxy community in Switzerland" autotoc: false --- -Only few people have access to a local (aka Swiss based) galaxy server in Switzerland. Nevertheless, the usage of usegalaxy.eu by people registering with a "*.ch" mail address is huge (~700 registrations as of July 2024). The aim of this community is to make things easier for any people in Switzerland wishing to contact other Swiss people. +Only few people have access to a local (aka Swiss based) galaxy server in Switzerland. Nevertheless, the usage of usegalaxy.eu by people registering with a "*.ch" mail address is huge (~750 registrations as of November 2024). The aim of this community is to make things easier for any people in Switzerland wishing to contact other Swiss people. At this stage, we just have a [mailing list](https://lists.galaxyproject.org/lists/galaxy-switzerland@lists.galaxyproject.org), feel free to subscribe if you are using galaxy in Switzerland or write to us. From 046d8d338d8b187db2d8fe92b7e728591dca96ac Mon Sep 17 00:00:00 2001 From: Wendi Bacon <44605769+nomadscientist@users.noreply.github.com> Date: Mon, 2 Dec 2024 15:52:46 +0000 Subject: [PATCH 19/19] Add tags --- content/events/2024-12-06-SPOC_CoFest/index.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/content/events/2024-12-06-SPOC_CoFest/index.md b/content/events/2024-12-06-SPOC_CoFest/index.md index 7443b987e9..f38f126e03 100644 --- a/content/events/2024-12-06-SPOC_CoFest/index.md +++ b/content/events/2024-12-06-SPOC_CoFest/index.md @@ -5,9 +5,11 @@ days: 1 tease: "The Single-cell and sPatial Omics Community of Practice (SPOC) are hosting their first Collaboration Fest, welcoming new and experienced contributors to our training materials." continent: NA location: + name: Online, Global url: https://training.galaxyproject.org/training-material/events/2024-12-06-spoc-cofest-2024.html +contact: Wendi Bacon gtn: true -tags: [cofest] +tags: [cofest, single-cell] subsites: [all] ---