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Create tool_data_path with other directories #115

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maikknebel opened this issue Jul 17, 2020 · 0 comments

maikknebel commented Jul 17, 2020

Can the tool_data_path, defined in galaxy_config.galaxy.tool_data_path be added to the folder creation task?

I try to deploy a blastdb.loc, but the tool_data_path-directory hasn't been created at the time where the galaxy_config_files-array gets processed.

galaxy_config_files:
  - src: files/galaxy/blastdb.loc
    dest: "{{ galaxy_mutable_data_dir }}/tool-data/blastdb.loc"
  - src: files/galaxy/blastdb_p.loc
    dest: "{{ galaxy_mutable_data_dir }}/tool-data/blastdb_p.loc"
...
galaxy_config:
  galaxy:
    tool_data_path: {{ galaxy_mutable_data_dir }}/tool-data

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