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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 133 44

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 48 11

  3. MMSplice_MTSplice MMSplice_MTSplice Public

    Tissue-specific variant effect predictions on splicing

    Jupyter Notebook 40 21

  4. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 36 21

  5. absplice absplice Public

    Python 33 4

  6. concise concise Public

    Concise: Keras extension for regulatory genomics

    Jupyter Notebook 32 13

Repositories

Showing 10 of 51 repositories
  • scooby Public
    gagneurlab/scooby’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Oct 11, 2024
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 133 MIT 44 43 5 Updated Oct 11, 2024
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Oct 11, 2024
  • gagneurlab/scooby_reproducibility’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Oct 11, 2024
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 36 MIT 21 27 0 Updated Oct 9, 2024
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    gagneurlab/dependencies_DNALM’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Oct 4, 2024
  • gagneurlab/spectralis’s past year of commit activity
    Python 10 7 4 0 Updated Oct 1, 2024
  • gagneurlab/AbExp-utils’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 21, 2024
  • gagneurlab/splicemap’s past year of commit activity
    Jupyter Notebook 18 4 2 0 Updated Sep 18, 2024
  • absplice Public
    gagneurlab/absplice’s past year of commit activity
    Python 33 4 1 2 Updated Sep 11, 2024

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