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funecology/fundiversity
Have a worked through example with individual level dataset

I m getting a lot of question of confused users regarding the use of fundiversity with datasets at the individual level because we keep referring to site-species matrix and species-trait matrix. Even though ...
documentation
enhancement
  • Rekyt
  • Opened 
    on Nov 8, 2023
  • #79

funecology/fundiversity
Be more specific in the help with memoization

A little connex to #71 but the current description of memoisation https://github.com/funecology/fundiversity/blob/2d19f5c5b2b52f58323ce0cd89e5a04547c11813/R/fd_fric.R#L34-L41 doesn t mention that the options ...
documentation
enhancement
  • Rekyt
  • 2
  • Opened 
    on Oct 6, 2023
  • #77

funecology/fundiversity
fd_dis gives error if site x species matrix does not have row names

I ran into an issue using fd_dis() when my site x species matrix doesn t have row names. For my purposes, I cannot force my site x species matrices to have row names as they are contained within a simulation ...
bug
  • mahonmb
  • 4
  • Opened 
    on Aug 1, 2023
  • #76

funecology/fundiversity
Should we write a vignette for non-continuous trait data?

I often get emailed about non-continuous trait data that fundiversity doesn t handle. I wonder if we should write a full vignette to show the general workflow, an include this in the error message for ...
documentation
  • Rekyt
  • 1
  • Opened 
    on Apr 26, 2023
  • #75

funecology/fundiversity
Add link to published paper

We should add in the CITATION file, as well as the description a link to the published paper
documentation
  • Rekyt
  • Opened 
    on Feb 16, 2023
  • #73

funecology/fundiversity
Using future and memoise together

We officially recommended not to use memoise and future at the same time in the fundiversity manuscript. However, there maybe ways to get both. I will collect here possibilities to work with both: ...
documentation
enhancement
  • Rekyt
  • 2
  • Opened 
    on Feb 6, 2023
  • #71

funecology/fundiversity
fd_fdis() bugs when site-species object is a data.frame() expects a matrix.

Reprex library( fundiversity ) fd_fdis(traits_birds, as.data.frame(site_sp_birds)) # Error in sp_com %*% traits: nécessite des arguments numériques/complexes matrice/vecteur sup Created on 2023-01-30 ...
bug
  • Rekyt
  • 2
  • Opened 
    on Jan 30, 2023
  • #68

funecology/fundiversity
Change title of package in DESCRIPTION as it doesn't only computes "Alpha functional diversity indices"

For now, the title of the package is Easy Computation of Alpha Functional Diversity Indices . However, given that we include fd_fric_intersect() and could include other beta-diversity indices in the future, ...
  • Rekyt
  • Opened 
    on Nov 14, 2022
  • #63

funecology/fundiversity
Renaming the vignettes to order them logically?

For now the vignettes on the CRAN and using vignette(package = fundiversity ) or browseVignettes(package = fundiversity ) are ordered based on alphabetical order: image This may not be a desirable order ...
documentation
  • Rekyt
  • 2
  • Opened 
    on Nov 1, 2022
  • #61

funecology/fundiversity
Add tip in error message because of non-continuous traits

It s the second person that contacts me because of the non-continuous trait error message: https://github.com/funecology/fundiversity/blob/0a58ab61c400fc732a2e1fda17686abe278b01e7/R/fd_fric.R#L65-L68 ...
enhancement
  • Rekyt
  • 1
  • Opened 
    on Oct 21, 2022
  • #60
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