deploy_shiny_r2u.yml

name: Deploy to shinyapps.io
on:
  # run on any push
  push:

  # run on request (via button in actions menu)
  workflow_dispatch:

env:
  _R_CHECK_FORCE_SUGGESTS_: "false"

jobs:
  deploy:
    name: Deploy to shinyapps

    # allow skipping deployment for commits containing '[automated]' or '[no-deploy]' in the commit message
    if: "!contains(github.event.head_commit.message, '[automated]') && !contains(github.event.head_commit.message, '[no-deploy]')"
    runs-on: ubuntu-latest
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup
        uses: eddelbuettel/github-actions/r-ci-setup@master

      - name: Bootstrap
        run: ./run.sh bootstrap

      #- name: Dependencies
      #  run: ./run.sh install_deps

      - name: All Dependencies
        run: ./run.sh install_all

      - name: Push to shiny.io
        env:
          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
        run: |
          Rscript -e "
              install.packages(c('rsconnect', 'remotes'));
              bspm::disable();
              remotes::install_github('forrtproject/FReD', force = TRUE);
              rsconnect::setAccountInfo(name='forrt-replications', token=${{secrets.SHINYAPPS_TOKEN}}, secret=${{secrets.SHINYAPPS_SECRET}});
              appDir <- system.file('fred_explorer', package = 'FReD');
              rsconnect::deployApp(appDir, forceUpdate = TRUE);
              appDir <- system.file('fred_annotator', package = 'FReD');
              rsconnect::deployApp(appDir, forceUpdate = TRUE);
          "

      - name: Deploy release version conditionally
        if: github.event_name == 'release' && github.event.release.tag_name != '*test*'
        run: |
          R -e "
              appDir <- system.file('fred_explorer', package = 'FReD');
              rsconnect::deployApp(appName = 'fred_explorer_release', appDir, forceUpdate = TRUE);
              appDir <- system.file('fred_annotator', package = 'FReD');
              rsconnect::deployApp(appName = 'fred_annotator_release', appDir, forceUpdate = TRUE);
          "