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Handle data exported via MetaXpress (#201)
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* Change regex patterns to also match MeataXpress exports

* Add tests and test-datasets for MetaXpress exports

* handle mixed-acquisitions for MetaXpress exports

* change mixed acquisition handling for MetaXpress exports

* add test & resources for time-data; improve test documentation

* minor changes in docstrings and regex patterns

* add break in _compute_z_spacing

* change error message for MixedAcquisition

* fix regex patterns

* remove redundant tests; check for MixedAcquisition error message

* move tests for exported data

* rename test-data folder to ImageXpress_exported

* reduced test-data and adjusted tests
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@fstur
fstur authored Dec 13, 2024
1 parent 3af0142 commit 53b2608
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Showing 65 changed files with 732 additions and 26 deletions.
26 changes: 26 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3420/9987.HTD
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26 changes: 26 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3420/TimePoint_1/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3434/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3434/TimePoint_1/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3434/TimePoint_1/ZStep_0/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3434/TimePoint_1/ZStep_1/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3434/TimePoint_1/ZStep_2/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3435/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3435/TimePoint_1/9987.HTD
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33 changes: 33 additions & 0 deletions resources/ImageXpress_exported/9987_Plate_3435/TimePoint_2/9987.HTD
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"WellsSelection1", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection2", FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection3", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection4", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection5", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection6", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection7", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"WellsSelection8", FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE
"Sites", TRUE
"XSites", 2
"YSites", 1
"SiteSelection1", TRUE, TRUE
"Waves", TRUE
"NWavelengths", 4
"WaveName1", "DAPI"
"WaveName2", "FITC"
"WaveName3", "Texas Red"
"WaveName4", "Cy5"
"WaveCollect1", 1
"WaveCollect2", 1
"WaveCollect3", 1
"WaveCollect4", 1
"UniquePlateIdentifier", "fe477428-69e1-4edb-94d1-4098a0f3a611"
"EndFile"
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