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Inference improvements #130

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mortonjt opened this issue Mar 9, 2023 · 0 comments
Open
2 tasks

Inference improvements #130

mortonjt opened this issue Mar 9, 2023 · 0 comments
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enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed

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mortonjt commented Mar 9, 2023 •
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On inference time, we are currently not batching. So there is room for improvement for speeding up the DeepBLAST.align method in deepblast/trainer.py. I anticipate that we can get a 10-20x improvement in speed. Batching is already being done on training these models, so it is a matter of porting over some of the existing code.

  • Batching on protrans models
  • Batching on alignments
@mortonjt mortonjt added enhancement New feature or request help wanted Extra attention is needed good first issue Good for newcomers labels Mar 9, 2023
@mortonjt mortonjt mentioned this issue Mar 9, 2023
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enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed
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