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how to interpret the parameter "fastq_sequence_length" #31

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fanzheng10 opened this issue Dec 4, 2021 · 1 comment
Open

how to interpret the parameter "fastq_sequence_length" #31

fanzheng10 opened this issue Dec 4, 2021 · 1 comment

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@fanzheng10
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Dear author,

Thank you for making this tool. Not really an issue, but want to ask a question here:

How to interpret the parameter "fastq_sequence_length" in the config file? It seems it is only used by the "kseq_test" step. The default value is 42, what does it mean?

Thanks!
@sunta3iouxos
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I would assume the length of your reads of the fastq files. the FASTQC program should provide that

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@sunta3iouxos @fanzheng10