From b4c641fe5a64629ccbf517302c43d247cc469800 Mon Sep 17 00:00:00 2001 From: jhudsl-robot Date: Wed, 31 Jan 2024 03:50:19 +0000 Subject: [PATCH] Add collection file --- resources/collection.tsv | 32 ++++++++++++++++---------------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/resources/collection.tsv b/resources/collection.tsv index 4c182c9c..f92d0d01 100644 --- a/resources/collection.tsv +++ b/resources/collection.tsv @@ -1,8 +1,8 @@ name homepage html_url description topics -Adv_Reproducibility_in_Cancer_Informatics https://jhudatascience.org/Adv_Reproducibility_in_Cancer_Informatics https://github.com/jhudsl/Adv_Reproducibility_in_Cancer_Informatics This course the second course in a two part series that discusses reproducibility in the context of cancer informatics. python, r, reproducibility, version-control -AI_for_Decision_Makers https://hutchdatascience.org/AI_for_Decision_Makers/ https://github.com/fhdsl/AI_for_Decision_Makers "This is the series of courses in Fred Hutch DaSL's ""AI for Decision Makers"" specialization on Coursera." course, hutch-course +AI_for_Decision_Makers https://hutchdatascience.org/AI_for_Decision_Makers/ https://github.com/fhdsl/AI_for_Decision_Makers This is the series of courses in Fred Hutch DaSL's ""AI for Decision Makers"" specialization on Coursera. course, hutch-course AI_for_Efficient_Programming https://hutchdatascience.org/AI_for_Efficient_Programming/ https://github.com/fhdsl/AI_for_Efficient_Programming DaSL's course on AI skills for efficient programming artificial-intelligence, chatbot, course, hutch-course, learn-ai, llm, llms, software-learning -AnVIL_Book_Epigenetics_Intro https://hutchdatascience.org/AnVIL_Book_Epigenetics_Intro/ https://github.com/fhdsl/AnVIL_Book_Epigenetics_Intro "An introductory activity for epigenetics, or the idea of ""nature versus nurture"" in genetics. Learners use the UCSC Genome Browser." anvil, course, epigenetics, human-genomes, module, ucsc-browser +Adv_Reproducibility_in_Cancer_Informatics https://jhudatascience.org/Adv_Reproducibility_in_Cancer_Informatics https://github.com/jhudsl/Adv_Reproducibility_in_Cancer_Informatics This course the second course in a two part series that discusses reproducibility in the context of cancer informatics. python, r, reproducibility, version-control +AnVIL_Book_Epigenetics_Intro https://hutchdatascience.org/AnVIL_Book_Epigenetics_Intro/ https://github.com/fhdsl/AnVIL_Book_Epigenetics_Intro An introductory activity for epigenetics, or the idea of ""nature versus nurture"" in genetics. Learners use the UCSC Genome Browser. anvil, course, epigenetics, human-genomes, module, ucsc-browser AnVIL_Book_Getting_Started https://jhudatascience.org/AnVIL_Book_Getting_Started https://github.com/jhudsl/AnVIL_Book_Getting_Started A guide for getting started using AnVIL anvil, cloud-computing AnVIL_Book_Instructor_Guide https://jhudatascience.org/AnVIL_Book_Instructor_Guide https://github.com/jhudsl/AnVIL_Book_Instructor_Guide A guide for instructors using AnVIL for workshops, lessons, or courses. anvil, education AnVIL_Collection https://hutchdatascience.org/AnVIL_Collection/ https://github.com/fhdsl/AnVIL_Collection 📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects content-library, website @@ -13,14 +13,10 @@ AnVIL_SRA_Data https://hutchdatascience.org/AnVIL_SRA_Data/ https://github.com/f AnVIL_Template https://jhudatascience.org/AnVIL_Template/ https://github.com/jhudsl/AnVIL_Template An OTTR spinoff template for creating AnVIL content anvil, template AnVIL_Urban_Genomics_PCA https://hutchdatascience.org/AnVIL_Urban_Genomics_PCA/ https://github.com/fhdsl/AnVIL_Urban_Genomics_PCA Lab module and lectures for exploring PCA using feral pigeon populations anvil, genomics, pca, urban-data-science AnVIL_WDLs https://github.com/fhdsl/AnVIL_WDLs/tree/main https://github.com/fhdsl/AnVIL_WDLs Raw WDL workflow files for use on AnVIL and other platforms anvil, genomics, wdl, workflows -ari https://jhudatascience.org/ari/ https://github.com/jhudsl/ari :dancers: The Automated R Instructor edtech-software Baltimore_Community_Course https://jhudatascience.org/Baltimore_Community_Course https://github.com/jhudsl/Baltimore_Community_Course Baltimore Community Data Science Course at JHSPH through partnership with SOURCE community-outreach, course, data-science Choosing_Genomics_Tools http://hutchdatascience.org/Choosing_Genomics_Tools/ https://github.com/fhdsl/Choosing_Genomics_Tools A course to help learners find resources and tools to help them process and interpret their genomic data -code_review https://hutchdatascience.org/code_review/ https://github.com/fhdsl/code_review A repository with tips about code review and implementing it in a lab codereview, fhdasl, hutch-course, training Computing_for_Cancer_Informatics https://jhudatascience.org/Computing_for_Cancer_Informatics https://github.com/jhudsl/Computing_for_Cancer_Informatics The course covers the key underlying principles and concepts in computing. It covers concrete discussions of the differences between cloud and local computing. The course highlights a number of computing options and etiquette for using shared resources. computing, informatics -conrad http://hutchdatascience.org/conrad/ https://github.com/fhdsl/conrad Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package) azure, r, text-to-speech, tts DaSL_Collection https://hutchdatascience.org/DaSL_Collection https://github.com/fhdsl/DaSL_Collection 📚 An auto-generating library of all Data Science Lab Github-based content content-library, website -dasl-snack-github http://hutchdatascience.org/dasl-snack-github/ https://github.com/fhdsl/dasl-snack-github "A DaSL training ""snack"" covering the benefits and basics of using Git and GitHub to support your biomedical data science work. " hutch-course Data-Wrangling https://hutchdatascience.org/Data-Wrangling/ https://github.com/fhdsl/Data-Wrangling UW Summer Institute in Statistics: Data Wrangling in R data-science, data-wrangling, r-programming, r-stats, tidyverse DataTrail: 12_package https://datatrail-jhu.github.io/12_package/ https://github.com/datatrail-jhu/12_package How to Create an R package Course data-science, package-development, r-package DataTrail: DataTrail https://datatrail-jhu.github.io/DataTrail/ https://github.com/datatrail-jhu/DataTrail The re-organized DataTrail curriculum https://www.datatrail.org/ @@ -29,11 +25,11 @@ DataTrail: rgoogleclassroom https://datatrail-jhu.github.io/rgoogleclassroom/ ht DataTrail: scn http://swirlstats.com/scn/ https://github.com/datatrail-jhu/scn :school_satchel: The swirl Course Network - A Repository for swirl Courses Documentation_and_Usability https://jhudatascience.org/Documentation_and_Usability/ https://github.com/jhudsl/Documentation_and_Usability A course to cover the basics of creating documentation and tutorials to maximize the usability of informatics tools documentation, software-development Ethical_Data_Handling_for_Cancer_Research https://hutchdatascience.org/Ethical_Data_Handling_for_Cancer_Research/ https://github.com/fhdsl/Ethical_Data_Handling_for_Cancer_Research This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective. data, ethics, privacy, research, security -FH_Cluster_101 https://leanpub.com/courses/fredhutch/fredhutchcluster101 https://github.com/fhdsl/FH_Cluster_101 This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats. command-line, computing-cluster, course, hpcc, hutch-course FH_Cluster201 https://hutchdatascience.org/FH_Cluster201/ https://github.com/fhdsl/FH_Cluster201 An emerging course for effective use of FH Computing. -FH_letterhead https://github.com/fhdsl/FH_letterhead https://github.com/fhdsl/FH_letterhead A LaTeX template for Fred Hutch letterhead latex, letterhead, template +FH_Cluster_101 https://leanpub.com/courses/fredhutch/fredhutchcluster101 https://github.com/fhdsl/FH_Cluster_101 This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats. command-line, computing-cluster, course, hpcc, hutch-course FH_WDL101_Cromwell https://hutchdatascience.org/FH_WDL101_Cromwell/ https://github.com/fhdsl/FH_WDL101_Cromwell An introduction to using Cromwell and WDL at the Fred Hutch course, fredhutch, hutch-course, wdl FH_WDL102_Workflows https://hutchdatascience.org/FH_WDL102_Workflows/ https://github.com/fhdsl/FH_WDL102_Workflows Info about designing, optimizing and deploying your own WDL workflows course, fredhutch, openwdl, wdl, workflows +FH_letterhead https://github.com/fhdsl/FH_letterhead https://github.com/fhdsl/FH_letterhead A LaTeX template for Fred Hutch letterhead latex, letterhead, template GDSCN_Book_SARS_Galaxy_on_AnVIL https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnVIL/ https://github.com/jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy anvil, gdscn, genomics, module, sars-cov-2, variant-detection GDSCN_Book_Statistics_for_Genomics_Differential_Expression https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_Differential_Expression/ https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_Differential_Expression A set of lab modules for an introduction to differential gene expression anvil, cloud-computing, gdscn, gene-expression GDSCN_Book_Statistics_for_Genomics_PCA https://jhudatascience.org/GDSCN_Book_Statistics_for_Genomics_PCA/ https://github.com/jhudsl/GDSCN_Book_Statistics_for_Genomics_PCA A set of lab modules for PCA analysis anvil, gdscn, genomics @@ -43,20 +39,24 @@ GDSCN_Book_swirl https://jhudatascience.org/GDSCN_Book_swirl/ https://github.com GDSCN_SARS_RStudio_on_AnVIL https://hutchdatascience.org/GDSCN_SARS_RStudio_on_AnVIL/ https://github.com/fhdsl/GDSCN_SARS_RStudio_on_AnVIL Lab module and lectures for identifying phylogenetic history of SARS variants using R anvil, gdscn, phylogenetic-analysis, sars-cov-2 GitHub_Automation_for_Scientists http://hutchdatascience.org/GitHub_Automation_for_Scientists/ https://github.com/fhdsl/GitHub_Automation_for_Scientists A course that introduces Github actions to developers of scientific worklflows and software Informatics_Research_Leadership https://jhudatascience.org/Informatics_Research_Leadership/ https://github.com/jhudsl/Informatics_Research_Leadership Guidance on supporting multidisciplinary teams in cancer informatics. diversity, informatics, leadership +NIH_Data_Sharing https://hutchdatascience.org/NIH_Data_Sharing/ https://github.com/fhdsl/NIH_Data_Sharing Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy. data-management, data-sharing, grant-proposals, hutch-course, nih +OTTR_Template https://www.ottrproject.org/ https://github.com/jhudsl/OTTR_Template OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version. edtech-software, education, online-learning, open-source +OTTR_Template_Website https://jhudatascience.org/OTTR_Template_Website/ https://github.com/jhudsl/OTTR_Template_Website Template to create websites with checks for broken urls and spelling, as well as automated rendering. This is an offshoot of the OTTR_Template (https://github.com/jhudsl/OTTR_Template). edtech-software +Overleaf_and_LaTeX_for_Scientific_Articles https://hutchdatascience.org/Overleaf_and_LaTeX_for_Scientific_Articles/ https://github.com/fhdsl/Overleaf_and_LaTeX_for_Scientific_Articles The course covers basic information about why LaTeX can be useful, how to get started in Overleaf using LaTeX with a template, how to work with a team on Overleaf, and what to do when you encounter problems. latex, overleaf, scientific-publications +Reproducibility_in_Cancer_Informatics https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/ https://github.com/jhudsl/Reproducibility_in_Cancer_Informatics This course discusses reproducibility and replicability in the context of cancer informatics. data-science, informatics, python, r, reproducibility +SeattleStatSummer_R https://hutchdatascience.org/SeattleStatSummer_R/ https://github.com/fhdsl/SeattleStatSummer_R A 4-day introduction to R programming, focused on Fred Hutch Research Interns beginner, beginner-friendly, data-analysis, data-science, introduction-to-programming, r-programming, tidyverse +Using_Leanpub https://hutchdatascience.org/Using_Leanpub/ https://github.com/fhdsl/Using_Leanpub A gentle introduction to Leanpub course, education, leanpub +ari https://jhudatascience.org/ari/ https://github.com/jhudsl/ari :dancers: The Automated R Instructor edtech-software +code_review https://hutchdatascience.org/code_review/ https://github.com/fhdsl/code_review A repository with tips about code review and implementing it in a lab codereview, fhdasl, hutch-course, training +conrad http://hutchdatascience.org/conrad/ https://github.com/fhdsl/conrad Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package) azure, r, text-to-speech, tts +dasl-snack-github http://hutchdatascience.org/dasl-snack-github/ https://github.com/fhdsl/dasl-snack-github A DaSL training ""snack"" covering the benefits and basics of using Git and GitHub to support your biomedical data science work. hutch-course intro_to_r https://jhudatascience.org/intro_to_r/ https://github.com/jhudsl/intro_to_r A 2-week introduction to R programming course, with a focus on public health datasets beginner, beginner-friendly, beginner-programming, course, public-health, r-programming, tidyverse itn-metric http://hutchdatascience.org/itn-metric/ https://github.com/fhdsl/itn-metric Analyze ITCR metrics using {metricminer} jhudsl.github.io https://jhudatascience.org https://github.com/jhudsl/jhudsl.github.io source code for the JHU Data Science Lab website website metricminer https://hutchdatascience.org/metricminer/ https://github.com/fhdsl/metricminer R package that digs up data that matters from APIs, making it dashboard-ready edtech-software metricminer.org http://www.metricminer.org/ https://github.com/fhdsl/metricminer.org A website for metricminer -NIH_Data_Sharing https://hutchdatascience.org/NIH_Data_Sharing/ https://github.com/fhdsl/NIH_Data_Sharing Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy. data-management, data-sharing, grant-proposals, hutch-course, nih -OTTR_Template https://www.ottrproject.org/ https://github.com/jhudsl/OTTR_Template OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version. edtech-software, education, online-learning, open-source -OTTR_Template_Website https://jhudatascience.org/OTTR_Template_Website/ https://github.com/jhudsl/OTTR_Template_Website Template to create websites with checks for broken urls and spelling, as well as automated rendering. This is an offshoot of the OTTR_Template (https://github.com/jhudsl/OTTR_Template). edtech-software ottrpal https://jhudatascience.org/ottrpal/ https://github.com/jhudsl/ottrpal Tools for converting OTTR courses into Leanpub or Coursera courses :otter: edtech-software ottrproject.org https://www.ottrproject.org/ https://github.com/jhudsl/ottrproject.org This repo publishes ottrproject.org -Overleaf_and_LaTeX_for_Scientific_Articles https://hutchdatascience.org/Overleaf_and_LaTeX_for_Scientific_Articles/ https://github.com/fhdsl/Overleaf_and_LaTeX_for_Scientific_Articles The course covers basic information about why LaTeX can be useful, how to get started in Overleaf using LaTeX with a template, how to work with a team on Overleaf, and what to do when you encounter problems. latex, overleaf, scientific-publications personas http://hutchdatascience.org/personas https://github.com/fhdsl/personas Where RDI curates the DaSL Data Science Personas data-science, personas, training -Reproducibility_in_Cancer_Informatics https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/ https://github.com/jhudsl/Reproducibility_in_Cancer_Informatics This course discusses reproducibility and replicability in the context of cancer informatics. data-science, informatics, python, r, reproducibility -SeattleStatSummer_R https://hutchdatascience.org/SeattleStatSummer_R/ https://github.com/fhdsl/SeattleStatSummer_R A 4-day introduction to R programming, focused on Fred Hutch Research Interns beginner, beginner-friendly, data-analysis, data-science, introduction-to-programming, r-programming, tidyverse text2speech http://jhudatascience.org/text2speech/ https://github.com/jhudsl/text2speech Text to Speech edtech-software, speech-synthesis, text-to-speech, tts, voice tidyversecourse http://jhudatascience.org/tidyversecourse/ https://github.com/jhudsl/tidyversecourse Tidyverse Skills for Data Science in R r, tidyverse -Using_Leanpub https://hutchdatascience.org/Using_Leanpub/ https://github.com/fhdsl/Using_Leanpub A gentle introduction to Leanpub course, education, leanpub